Pairwise Alignments

Query, 186 a.a., endonuclease SmrB from Vibrio cholerae E7946 ATCC 55056

Subject, 176 a.a., Smr domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  154 bits (388), Expect = 1e-42
 Identities = 78/174 (44%), Positives = 108/174 (62%), Gaps = 4/174 (2%)

Query: 14  DKDNLDDDFSLFRDEVKGVKKLRQDTI-LHAPNRNPKQKEIRRTEREASDNDFYFSDEFM 72
           +KD+  +  ++F   ++G+K + QD      P +  ++ E++  +  A+    YFSD + 
Sbjct: 2   NKDDDKEGMAMFSALIEGIKPITQDKRHFRTPLKTKQEIELKEQQLHANS---YFSDTYQ 58

Query: 73  PHLTDEGPTRYARSDVSKYEVKRLRRGVYVPDVFLDMHGMTQQEAKRELGAMIAYCLKEN 132
           P L  +GP R+    V   E+KRLRRG Y PD+ LD+HG  Q EAK EL A+I  C+K+ 
Sbjct: 59  PLLPVQGPMRWLDEGVDSLELKRLRRGDYQPDLLLDLHGYRQSEAKLELAALIQACVKQQ 118

Query: 133 VHCACVQHGIGKHILKQNVPLWLAQHPDVLAFHQAPLEFGGDGALLVLLSIPEK 186
             C CV HG G  ILKQ VP+WL QHP V AFHQAP E+GGD ALLVL+ I ++
Sbjct: 119 SQCCCVMHGYGTGILKQQVPMWLVQHPMVKAFHQAPKEWGGDAALLVLIDIGDQ 172