Pairwise Alignments

Query, 186 a.a., endonuclease SmrB from Vibrio cholerae E7946 ATCC 55056

Subject, 196 a.a., Smr domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 70.5 bits (171), Expect = 2e-17
 Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 14/181 (7%)

Query: 18  LDDDFSLFRDEVKGVKKLRQDTILHAPNRNPKQKEIRRTER-EASDNDFYFSD-----EF 71
           LD++ +LF +E+ GV  L+ D  + A N  PK   + + +R +A   + Y +        
Sbjct: 2   LDNESALFFEEMAGVVPLKGD--IKAVNLQPKALTVEQIQRRDALQREAYLACMPLELSL 59

Query: 72  MPHLTDEGPTRYARSDVSKYEVKRLRRGVYVPDVFLDMHGMTQQEAKRELGAMIAYCLKE 131
           +P +  +    + R  V     KRLR G Y   + LD+H     +A+  L   +   L  
Sbjct: 60  IPIIAPDDIVSFKREGVQGGVFKRLRLGQYSIKMELDVHAYRLSQAREALLNYLLAALAH 119

Query: 132 NVHCACVQHGIGKH------ILKQNVPLWLAQHPDVLAFHQAPLEFGGDGALLVLLSIPE 185
              C  + HG G +      +LK  V  WL+Q   VLA+H A  E GG GAL V+L+  E
Sbjct: 120 GERCVMLIHGKGHNSKPVAGLLKSAVCHWLSQLEMVLAYHSAKTEQGGTGALYVMLTKSE 179

Query: 186 K 186
           +
Sbjct: 180 Q 180