Pairwise Alignments

Query, 207 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis S2

 Score = 97.4 bits (241), Expect = 2e-25
 Identities = 59/201 (29%), Positives = 110/201 (54%), Gaps = 6/201 (2%)

Query: 5   VLYIIGITAEAMTGALSAGRRKMDWFGVMLVASATAIGGGTVRDILLGHYPLGWVKNPEY 64
           ++ IIG+ A A+ GAL   ++ +D  G++++   TA+GGG  RD+L+   P   +++P  
Sbjct: 9   IMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYA-LRSPND 67

Query: 65  LAITCVA---GVLTTWVYKWVIKLKGLFIRLDALGLIVFSIIGTQVAMRMGLHPGICLVS 121
           + +  +     ++   V+   +  K +    DA+GL  F+  G  +A    +     ++ 
Sbjct: 68  MGVALIGVWCAIVIFKVFNEDVSNKYIIQIPDAVGLSAFTTTGAMIAYNFDVSFFGIIIL 127

Query: 122 AVVTGVFGGLLRDLICRQPPLVLHEELYASIALL-ASGLYLALLEFGVSDVVSTVVTLVV 180
           A +TGV GG++ D++ ++ P  L E+ YAS +++ A   YLA+L   +S  +S V+  +V
Sbjct: 128 ATLTGVGGGIISDILLQKTPSALTEDFYASCSIIGAIAFYLAILS-NLSLEMSAVICSIV 186

Query: 181 GYTLRMAAVRFKWRLPSFHLE 201
              +R+ A+  KW LP F+ E
Sbjct: 187 VLMIRIVAILCKWSLPKFYSE 207



 Score = 40.8 bits (94), Expect = 2e-08
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 86  KGLFIRLDALGLIVFSIIGTQVAMRMGLHPGICLVSAVVTGVFGGLLRDLICRQPPLVLH 145
           + +F  ++ +GL+ F+++G    ++ GL     +V  ++T + GG+ RDL+    P  L 
Sbjct: 4   ENIFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYALR 63

Query: 146 EELYASIALLASGLYLALLEFGV 168
                 +AL+  G++ A++ F V
Sbjct: 64  SPNDMGVALI--GVWCAIVIFKV 84