Pairwise Alignments

Query, 207 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 209 a.a., trimeric intracellular cation channel family protein from Methanococcus maripaludis JJ

 Score = 96.3 bits (238), Expect = 4e-25
 Identities = 59/201 (29%), Positives = 109/201 (54%), Gaps = 6/201 (2%)

Query: 5   VLYIIGITAEAMTGALSAGRRKMDWFGVMLVASATAIGGGTVRDILLGHYPLGWVKNPEY 64
           ++ IIG+ A A+ GAL   ++ +D  G++++   TA+GGG  RD+L+   P   +++P  
Sbjct: 9   IMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYA-LRSPND 67

Query: 65  LAITCVA---GVLTTWVYKWVIKLKGLFIRLDALGLIVFSIIGTQVAMRMGLHPGICLVS 121
           + +  +     ++   V+   +  K +    DA+GL  F+  G  +A    +     ++ 
Sbjct: 68  MGVALIGVWFAIVIFKVFNEDVSNKYIIQVPDAVGLSAFTTTGAMIAYNFDVSFFGIIIL 127

Query: 122 AVVTGVFGGLLRDLICRQPPLVLHEELYASIALL-ASGLYLALLEFGVSDVVSTVVTLVV 180
           A +TGV GG++ D++ ++ P  L E+ YAS +++ A   YLA+L   +S   S V+  +V
Sbjct: 128 ATLTGVGGGIISDILLQKTPSALTEDFYASCSIIGAIAFYLAILS-NLSLETSAVICSIV 186

Query: 181 GYTLRMAAVRFKWRLPSFHLE 201
              +R+ A+  KW LP F+ E
Sbjct: 187 VLMIRIVAMLCKWSLPKFYSE 207



 Score = 42.0 bits (97), Expect = 8e-09
 Identities = 19/54 (35%), Positives = 34/54 (62%)

Query: 2   LLSVLYIIGITAEAMTGALSAGRRKMDWFGVMLVASATAIGGGTVRDILLGHYP 55
           ++ V   +G++A   TGA+ A    + +FG++++A+ T +GGG + DILL   P
Sbjct: 94  IIQVPDAVGLSAFTTTGAMIAYNFDVSFFGIIILATLTGVGGGIISDILLQKTP 147



 Score = 41.2 bits (95), Expect = 1e-08
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 86  KGLFIRLDALGLIVFSIIGTQVAMRMGLHPGICLVSAVVTGVFGGLLRDLICRQPPLVLH 145
           + +F  ++ +GL+ F+++G    ++ GL     +V  ++T + GG+ RDL+    P  L 
Sbjct: 4   ENIFFIMNIIGLLAFAVVGALKGIKKGLDLLGIIVLGIMTALGGGITRDLLVNTIPYALR 63

Query: 146 EELYASIALLASGLYLALLEFGV 168
                 +AL+  G++ A++ F V
Sbjct: 64  SPNDMGVALI--GVWFAIVIFKV 84