Pairwise Alignments

Query, 207 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 208 a.a., putative transporter, required for glycine utilization (from data) from Shewanella oneidensis MR-1

 Score =  144 bits (363), Expect = 1e-39
 Identities = 71/197 (36%), Positives = 124/197 (62%), Gaps = 1/197 (0%)

Query: 8   IIGITAEAMTGALSAGRRKMDWFGVMLVASATAIGGGTVRDILLGHYPLGWVKNPEYLAI 67
           + G    A++GAL+AGR +MD FGV+++AS TA+GGG++RD L+G  P+ W+++P Y+ +
Sbjct: 10  LCGTAVFALSGALAAGRHRMDPFGVIVLASVTAVGGGSIRDALIGATPVFWIRDPNYIIV 69

Query: 68  TCVAGVLTTWVYKWVIKLKGLFIRL-DALGLIVFSIIGTQVAMRMGLHPGICLVSAVVTG 126
                V    + +   K+    + + DALGL +F++IG + A+ MGL   I +V  ++TG
Sbjct: 70  ILATVVACLLLVRRPRKMPEYVLPVADALGLALFTVIGAEKALNMGLSGMIAVVMGLITG 129

Query: 127 VFGGLLRDLICRQPPLVLHEELYASIALLASGLYLALLEFGVSDVVSTVVTLVVGYTLRM 186
           V GG++RDL+CRQ P+VL  E+YA+ +++    Y   L  G+ +  +  + +     +R+
Sbjct: 130 VGGGIIRDLLCRQIPMVLRTEIYATASIIGGIGYTVSLACGMGEKTALFLAMASALIIRL 189

Query: 187 AAVRFKWRLPSFHLETE 203
            A+++   LP+F L+T+
Sbjct: 190 CAIKWHLSLPAFDLKTK 206



 Score = 32.3 bits (72), Expect = 6e-06
 Identities = 23/72 (31%), Positives = 34/72 (47%)

Query: 93  DALGLIVFSIIGTQVAMRMGLHPGICLVSAVVTGVFGGLLRDLICRQPPLVLHEELYASI 152
           D  G  VF++ G   A R  + P   +V A VT V GG +RD +    P+    +    I
Sbjct: 9   DLCGTAVFALSGALAAGRHRMDPFGVIVLASVTAVGGGSIRDALIGATPVFWIRDPNYII 68

Query: 153 ALLASGLYLALL 164
            +LA+ +   LL
Sbjct: 69  VILATVVACLLL 80



 Score = 27.7 bits (60), Expect = 2e-04
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 2   LLSVLYIIGITAEAMTGALSAGRRKMDWFGVMLVASATAIGGGTVRDILLGHYPLGWVKN 61
           +L V   +G+    + GA  A    +     +++   T +GGG +RD+L    P+  V  
Sbjct: 91  VLPVADALGLALFTVIGAEKALNMGLSGMIAVVMGLITGVGGGIIRDLLCRQIPM--VLR 148

Query: 62  PEYLAITCVAG 72
            E  A   + G
Sbjct: 149 TEIYATASIIG 159