Pairwise Alignments

Query, 674 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Vibrio cholerae E7946 ATCC 55056

Subject, 660 a.a., 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC from Pseudomonas fluorescens FW300-N2E2

 Score =  391 bits (1005), Expect = e-113
 Identities = 258/675 (38%), Positives = 355/675 (52%), Gaps = 35/675 (5%)

Query: 9   HAQLGWNDAGTPVSDQFDDVYFSNVNGLAETRYVFLEQNHLPQRWHN-DDQRRFVIAETG 67
           HAQL W+D G P S  FDDVYFS+ +GL ETRYVFLEQN+L +R+    D  R VI ETG
Sbjct: 7   HAQLDWDDQGRPRSRVFDDVYFSDQSGLEETRYVFLEQNNLAERFAALADDGRLVIGETG 66

Query: 68  FGTGLNFLAVWQAFVAFREANPDAKLKELHFISFEKYPLSKSDLIQAHQAWPELAQFAQK 127
           FGTGLNFL  WQ F     A        LHF+S EKYPL+  DL +A   WP+LA  A++
Sbjct: 67  FGTGLNFLCAWQLFEQCAPAGA-----RLHFVSVEKYPLTPQDLCRALALWPQLALQAEQ 121

Query: 128 LHKHYPLAIPECQRIVLNDGLVTLDLWFGDIKDCLPKVATQEQGLVDAWFLDGFAPSKNP 187
           L   Y       QR+VL  G VTL L  GD  + LP++     G +DAWFLDGFAP++NP
Sbjct: 122 LLGQYVAIHQGFQRLVLAGGRVTLTLLIGDALEQLPQL----DGQIDAWFLDGFAPARNP 177

Query: 188 EMWNQNLFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVKGFGTKREMIAG---S 244
           EMW   LFA +A+LA  G T +TFTS G+VRR L  AGF MK+  G G K E++ G    
Sbjct: 178 EMWTAELFAELARLAAPGATLSTFTSTGWVRRLLNAAGFKMKRTPGIGHKWEILRGVFLG 237

Query: 245 LSEKVPYTNIAPEF--RFEATHGLQEVAIIGGGIASATLATTLARRGVAVTLYCADEKPA 302
             E+ P    A  +  R     G +   +IGGG+A    A +LA RG  VTL       A
Sbjct: 238 WPEQTPAPASAKPWYARPLPPIGERRALVIGGGLAGCASAASLAARGWQVTLLERHAGLA 297

Query: 303 QGASGNRQGAVYPLLSGDHNAVSRVFAPAFLFARQWIEQAAEQINFDHDWCGVTQLMWDE 362
           + ASGN QG +Y  LS    A+S++    F + R+ +EQ   Q   D D CGV QL ++ 
Sbjct: 298 EEASGNPQGVLYLKLSAHGTALSQMILSGFGYTRRVLEQL--QRGIDWDACGVLQLAFNS 355

Query: 363 KATDKLKSMLEGNFPTQLVHGLSAEQTNQQVGVPVDKASVHYPLGGWLSPAELTQGLIHL 422
           K  ++   + E  FP  L+H L   +   + G+ +    + YP GGW+ P  L +     
Sbjct: 356 KEAERQAQLAEA-FPRDLLHPLDQSEAQVRSGIGLACGGLFYPEGGWVHPPALCRW---- 410

Query: 423 LEQQGKLTAHYQTPIDALTWQPETQLWQLRSGD-TLMSHQCVVIASGHQFDSLSQTAELP 481
             Q        Q   D L  +     WQ   G+  L S    V+AS  +       A+LP
Sbjct: 411 --QASGTAIDVQPHHDVLQLRRVDGQWQAWDGERCLASAPVAVLASAAEIKRFEPAADLP 468

Query: 482 LGKVKGQVSHIPTTETLSKINSVLCYDGYMTPVSQQNGYHCIGASYDRQHLDATFDPQAQ 541
           L +++GQ++ +P T     + +V+C +GY+ P   + G H +GAS+D    D T    A+
Sbjct: 469 LKRIRGQITRLPQTTRSLSLATVVCAEGYVAP--PRLGEHTLGASFDFNSDDLT-PTAAE 525

Query: 542 H----ENAQKLIHCLPEQTWPLEVDVSGNQSRQGVRCVSRDHLPFVGNVGEFSKITEQYR 597
           H    +  +++   L ++     +D    + R   RC S D+LP VG + +    +E Y 
Sbjct: 526 HAGNLQMLEEISQDLVDRLNAGSLDPERLEGRAAFRCTSPDYLPIVGPLADRQAFSEAYS 585

Query: 598 DLAQQHQAEPIALYP---QLYALVGLGSRGLSSAPLMAELLASQMCGDPMPLGVDLLEQL 654
            L +  +  P    P    LY   G GSRGL +APL  EL+A+ +  +P+PL   + E  
Sbjct: 586 ALGKDARQVPDTSCPWFEGLYINSGHGSRGLITAPLSGELIAAWLDNEPLPLPRSVAEAC 645

Query: 655 HPSRMWVRKLRKGKA 669
           HP+R  +R L +GKA
Sbjct: 646 HPNRFALRALIRGKA 660