Pairwise Alignments

Query, 674 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Vibrio cholerae E7946 ATCC 55056

Subject, 660 a.a., FAD-dependent cmnm(5)s(2)U34 oxidoreductase from Pseudomonas fluorescens FW300-N2C3

 Score =  390 bits (1003), Expect = e-113
 Identities = 261/688 (37%), Positives = 359/688 (52%), Gaps = 61/688 (8%)

Query: 9   HAQLGWNDAGTPVSDQFDDVYFSNVNGLAETRYVFLEQNHLPQRWHN-DDQRRFVIAETG 67
           HAQL W+D G P S  FDDVYFS+ +GL ETRYVFLEQN+L +R+       R VI ETG
Sbjct: 7   HAQLDWDDQGRPRSRVFDDVYFSDQSGLEETRYVFLEQNNLAERFAALPADGRLVIGETG 66

Query: 68  FGTGLNFLAVWQAFVAFREANPDAKLKELHFISFEKYPLSKSDLIQAHQAWPELAQFAQK 127
           FGTGLNFL  WQ F    +  P      LHF+S EKYPL++ DL +A   WP+LA  A++
Sbjct: 67  FGTGLNFLCAWQLF---EQCAPTGA--RLHFVSVEKYPLTQQDLCRALALWPQLAPQAEQ 121

Query: 128 LHKHYPLAIPECQRIVLNDGLVTLDLWFGDIKDCLPKVATQEQGLVDAWFLDGFAPSKNP 187
           L   Y       QR+VL +G V L L  GD  + LP++     G +DAWFLDGFAP++NP
Sbjct: 122 LLGQYVAIHQGFQRLVLANGRVMLTLLIGDALEQLPQL----DGQIDAWFLDGFAPARNP 177

Query: 188 EMWNQNLFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVKGFGTKREMIAG---S 244
           EMW   LFA +A+LA  G T +TFTS G+VRR L  AGF MK+  G G K E++ G    
Sbjct: 178 EMWTAELFAELARLAAPGATLSTFTSTGWVRRLLNAAGFKMKRTPGIGHKWEILRGVFLG 237

Query: 245 LSEKVPYTNIAPEF--RFEATHGLQEVAIIGGGIASATLATTLARRGVAVTLYCADEKPA 302
             E+    + A  +  R     G +   ++GGG+A    A +LA RG  VTL       A
Sbjct: 238 WPEQTATPSPAKPWYARPVPPTGERRALVVGGGLAGCASAASLAARGWQVTLLERHAGLA 297

Query: 303 QGASGNRQGAVYPLLSGDHNAVSRVFAPAFLFARQWIEQAAEQINFDHDWCGVTQLMWDE 362
           + ASGN QG +Y  LS    A+S++    F + R+ +EQ   Q   D D CGV QL ++ 
Sbjct: 298 EEASGNPQGVLYLKLSAHGTALSQMILSGFGYTRRVLEQL--QRGVDWDACGVLQLAFNS 355

Query: 363 KATDKLKSMLEGNFPTQLVHGLSAEQTNQQVGVPVDKASVHYPLGGWLSPAELTQGLIHL 422
           K  ++   + E  FPT L+H L   +   + G+ +    + YP GGW+ P  L       
Sbjct: 356 KEAERQVQLAEA-FPTDLLHTLDQSEAQARSGIGLACGGLFYPEGGWVHPPAL------- 407

Query: 423 LEQQGKLTAHYQTPIDALTWQPETQLWQLRSGD----------TLMSHQCVVIASGHQFD 472
                     +Q    A+  QP   +  LR  D           L S   V++AS  +  
Sbjct: 408 --------CRWQASGPAIDVQPHHDVLHLRRVDGQWQAWDSERCLASAPVVILASAAEIK 459

Query: 473 SLSQTAELPLGKVKGQVSHIPTTETLSKINSVLCYDGYMTPVSQQNGYHCIGASYDRQHL 532
                A+LPL +++GQ++ +P T     + +V+C +GY+ P  Q  G H +GAS+D    
Sbjct: 460 RFEPAADLPLKRIRGQITRLPQTHRSQSLATVVCAEGYVAPPRQ--GEHTLGASFDFNSD 517

Query: 533 DATFDPQAQH--------ENAQKLIHCLPEQTWPLEVDVSGNQSRQGVRCVSRDHLPFVG 584
           D T    A+H        E +Q L+  L   T    +D    + R   RC S D+LP VG
Sbjct: 518 DLT-PTAAEHAGNLRMLEEISQDLVQRLNAAT----LDPEHLEGRVAFRCTSPDYLPIVG 572

Query: 585 NVGEFSKITEQYRDLAQQHQAEPIALYP---QLYALVGLGSRGLSSAPLMAELLASQMCG 641
            + +    T+ Y  L +  +  P A  P    LY   G GSRGL +APL  EL+A+ +  
Sbjct: 573 PLADRQAFTDAYAALGKDARQVPDAPCPWLAGLYINSGHGSRGLITAPLSGELIAAWLDN 632

Query: 642 DPMPLGVDLLEQLHPSRMWVRKLRKGKA 669
           +P+PL   + E  HP+R  +R L +GKA
Sbjct: 633 EPLPLPRSVAEACHPNRFALRALIRGKA 660