Pairwise Alignments

Query, 674 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Vibrio cholerae E7946 ATCC 55056

Subject, 686 a.a., FAD dependent oxidoreductase (RefSeq) from Shewanella loihica PV-4

 Score =  285 bits (729), Expect = 5e-81
 Identities = 164/420 (39%), Positives = 238/420 (56%), Gaps = 22/420 (5%)

Query: 268 EVAIIGGGIASATLATTLARRGVAVTLYCADEKPAQGASGNRQGAVYPLLSGDHNAVSRV 327
           E AIIGGG+ASA LA +LA RG  V+ +C D+ P + ASGN+QGA+YPLL+ +H ++S  
Sbjct: 272 ETAIIGGGVASANLALSLAERGKKVSFFCMDKAPGEQASGNKQGAIYPLLTPEHGSLSHY 331

Query: 328 FAPAFLFARQWIEQAAEQ-INFDHDWCGVTQLMWDEKATDKLKSMLEGN-FPTQLVHGLS 385
           F   +LF+RQ I+Q  E      HD+CGV Q   DE++  +L  ++    +   +   + 
Sbjct: 332 FLLGYLFSRQRIKQLLESGHEIPHDFCGVLQTGHDERSHKRLTKIINAQPWAESIARPVD 391

Query: 386 AEQTNQQVGVPVDKASVHYPLGGWLSPAELTQGLIHLLEQQGKLTAHYQTPIDALTWQPE 445
           A Q     GV ++   ++YPL GW+SP   T+  I   E+ GK T+HYQ  I A+ +  E
Sbjct: 392 ALQATALAGVTIEHQGIYYPLAGWVSPQAFTRAAISQAERLGKQTSHYQCQITAIRF--E 449

Query: 446 TQLWQL---RSGDTLM--SHQCVVIASGHQFDSLSQTAELPLGKVKGQVSHIPTTETLSK 500
            Q W L   + G  +    +  +V+A+G      +QT  LP+   +GQVSHIP    L  
Sbjct: 450 NQQWYLSAIQDGQKVEFGPYANLVLANGRHLTDFAQTDHLPISGFRGQVSHIPERAPLKD 509

Query: 501 INSVLCYDGYMTPVSQQNGYHCIGASYDRQHLDATFDPQAQHENAQKLIHCLPEQTWPLE 560
           + +VLC  GY+TP   +   HC GASY +   +  +    Q EN  K I       W   
Sbjct: 510 LKTVLCAHGYLTPAHDK--LHCTGASYVKDASNLDYSAVEQVENLDK-IRTSYGGEWTKA 566

Query: 561 VDVSGNQSRQGVRCVSRDHLPFVGNVGEFSKITEQY----------RDLAQQHQAEPIAL 610
           VD++G+ +R GVR V+RDH P +G   +F  I+  Y          ++ A+  Q     +
Sbjct: 567 VDITGHSARVGVRMVTRDHAPMMGCAPDFEAISATYISHQQTKKSTKESAKCWQTTSAPV 626

Query: 611 YPQLYALVGLGSRGLSSAPLMAELLASQMCGDPMPLGVDLLEQLHPSRMWVRKLRKGKAL 670
           +  L+ L GLGSRGL+S PL AE+LA+Q+CG+ +P   D+L  L+P+RMW+RKL KGKAL
Sbjct: 627 HQGLFILGGLGSRGLTSGPLAAEILAAQLCGELLPATQDILALLNPNRMWMRKLIKGKAL 686