Pairwise Alignments

Query, 674 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  311 bits (796), Expect = 8e-89
 Identities = 219/667 (32%), Positives = 333/667 (49%), Gaps = 82/667 (12%)

Query: 62  VIAETGFGTG---LNFLAVWQAFVAFREANPDAKLKELHFISFEKYPLSKSDL------I 112
           ++ + G G G   L+F+  WQ     +       L  L    FE  P++  +L       
Sbjct: 1   MMGQWGLGDGIELLSFIHYWQTLAKTQN------LPRLLLKVFEPNPINYYELKLLWDQS 54

Query: 113 QAHQAWPELAQFAQKLHKHYPLAIPECQRIVLNDGLVTLDLWFGDIKDCLPKVATQEQGL 172
           Q+    P L   A  + +  P  I  CQR++ +DG ++LDL FGD++  L          
Sbjct: 55  QSLILHPHLQPIANAIIEAKPARIIGCQRLIFDDGRISLDLDFGDLQTMLVNQPHCGTYP 114

Query: 173 VDAWFLDGFAPSKNPEMWNQNLFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVK 232
           +  W +    P   P++  + L+  MA+L+           A F+   L +    + K  
Sbjct: 115 IQQWLI---LPHLAPQLSRKILWQ-MARLSAD--------DAHFIGVELAETTQNLAKTC 162

Query: 233 GFGT---KREMIAGSLSEKVPYTNIAPEFRFEATHGL---------------------QE 268
           GF       +M+ G   + +    +  +        L                     Q 
Sbjct: 163 GFSPLTITADMLCGEQIDSIASQIVTDDILLHERKLLRQQANNHQAFTPRPSQVASTKQP 222

Query: 269 VAIIGGGIASATLATTLARRGVAVTLYCADEKPAQGASGNRQGAVYPLLSGDHNAVSRVF 328
           +AIIGGG+ASA L  +LA R  +  L+C D    QGASGNRQGA+YPLL+ +++ +SR F
Sbjct: 223 IAIIGGGLASAHLMLSLAEREQSSILFCKDNDLGQGASGNRQGAIYPLLTPENDELSRFF 282

Query: 329 APAFLFARQWI-----------EQAAEQINFDHDWCGVTQLMWDEKATDKLKSMLEG-NF 376
             AFLF+R+ I           + A+  +   HD+CGV Q   DE++  +L  +++  ++
Sbjct: 283 QQAFLFSRRRIAALSLASMKGSDVASGVMPISHDFCGVLQTGHDERSQQRLDKIIQSQDW 342

Query: 377 PTQLVHGLSAEQTNQQVGVPVDKASVHYPLGGWLSPAELTQGLIHLLEQQGKLTAHYQTP 436
           P ++ + + A + N+   + +DKA  +YPLGGW+ P E  +  +    Q   +  H+ T 
Sbjct: 343 PAEIAYAVDASEANKIAKIGIDKAGFYYPLGGWVCPFEYAKAAVDKASQLANVQCHFNTE 402

Query: 437 IDALTWQPETQLWQLRSGDTLMS-HQCVVIASGHQFDSLSQTAELPLGKVKGQVSHIPTT 495
           I  +  + + + W L S D      + +V+A+G Q    S +  L +   +GQVSHIP+ 
Sbjct: 403 ITEI--ERDAKGWYLLSQDQRFGPFRQLVLANGAQLTQFSASERLQISPFRGQVSHIPSQ 460

Query: 496 ETLSKINSVLCYDGYMTPVSQQNGYHCIGASYDR--QHLDATFDPQAQHENAQKLIHCLP 553
             LS++ +VLC +GY+TP  Q  G HC+GASY +  +HLD  F P  Q EN  K+    P
Sbjct: 461 FQLSQLATVLCANGYLTPSHQ--GLHCLGASYVKAAEHLD--FCPLEQLENLGKMQQSYP 516

Query: 554 EQTWPLEVDVSGNQSRQGVRCVSRDHLPFVGNVGEFSKITEQY-RDLAQQHQAEPIALYP 612
            Q W  ++D+S N +R GVR V+RDH P +G   + ++I  +Y +    Q QAE I  Y 
Sbjct: 517 NQDWVEDIDISANSARVGVRMVTRDHFPMMGCAPDVNEIWARYEQHQINQQQAEQIRHYW 576

Query: 613 Q---------LYALVGLGSRGLSSAPLMAELLASQMCGDPMPLGVDLLEQLHPSRMWVRK 663
           Q         LY L GLGSRGLSS PL AE LA+Q+  +P+PL    L +L P+RMW+RK
Sbjct: 577 QTTPAPIHDGLYILGGLGSRGLSSGPLAAECLAAQLTDEPLPLDWPTLNKLSPNRMWLRK 636

Query: 664 LRKGKAL 670
           L KGKAL
Sbjct: 637 LLKGKAL 643