Pairwise Alignments

Query, 674 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Vibrio cholerae E7946 ATCC 55056

Subject, 240 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 61.2 bits (147), Expect = 5e-14
 Identities = 56/197 (28%), Positives = 86/197 (43%), Gaps = 23/197 (11%)

Query: 63  IAETGFGTGLNFLAVWQAFVAFREANPDAKLKELHFISFEKYPLSKSDLIQ-AHQAWPEL 121
           I E GFGTGLN      A++   EA    +   +H+   E YPL    + Q  +   P  
Sbjct: 53  ILEIGFGTGLN------AWLTLEEAERSGR--NVHYTGLEPYPLEWQMVEQLGYIEQPAA 104

Query: 122 AQFAQKLHKHYPLAIPECQRIVLNDGLVTLDLWFGDIKDCLPKVATQEQGLV------DA 175
               + +H       P  + I       TL     D+ + + + +     ++      D 
Sbjct: 105 IDLFRAIHTS-----PWEEEISFTPHF-TLCKVQADVNEWITQRSHSPLSIIHSPLSFDV 158

Query: 176 WFLDGFAPSKNPEMWNQNLFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVKG-F 234
            + D FAP K PEMW+Q LF  +  L   G    T+ + G +RR L  AGF ++++ G  
Sbjct: 159 IYFDAFAPEKQPEMWSQELFNRLYVLLNEGGILTTYCAKGVIRRMLQAAGFIVERLPGPP 218

Query: 235 GTKREMI-AGSLSEKVP 250
           G KRE++ A  L +  P
Sbjct: 219 GGKREILRARKLKQNQP 235