Pairwise Alignments

Query, 674 a.a., bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., FAD dependent oxidoreductase (RefSeq) from Shewanella sp. ANA-3

 Score =  337 bits (865), Expect = 8e-97
 Identities = 218/653 (33%), Positives = 329/653 (50%), Gaps = 58/653 (8%)

Query: 63  IAETGFGTGLNFLAVWQAFVAFREANPDAKLKELHFISFEKYPLSKS-DLIQAHQAWPEL 121
           + + G G GL  L++   +    ++N    +K         Y L    D  Q+  + P L
Sbjct: 1   MGQWGLGDGLELLSLLHHWQTQTQSNTRLLVKVFEPNPINDYELKLLWDQSQSLISTPHL 60

Query: 122 AQFAQKLHKHYPLAIPECQRIVLNDGLVTLDLWFGDIKDCLPKVATQEQGLVDAWFLDGF 181
              A  + K  P  I  CQR++ +DG +T+DL FGD+   L  +       +  W +   
Sbjct: 61  QPIANAILKAKPARIIGCQRLIFDDGRITVDLHFGDLHTSLTNLPHSPAHPIQQWLVLPH 120

Query: 182 APSKNPEMWNQNLFAGMAKLAKHGCTCATFTSAGFVRRGLIDAGFAMKKVKGFGTKREMI 241
             S+     +  L   MA+L+           A  V++    +GF+   V      ++ +
Sbjct: 121 LASQ----LSGKLAWQMARLSADDAQLIGVNLAETVQQLAHSSGFSTLNVS-----QDAL 171

Query: 242 AGSLSEKVPYTNIAPEFRFEATHGLQE---------------------VAIIGGGIASAT 280
            G  S+ +P   I  E        L++                     VAI+GGG+ASA 
Sbjct: 172 NGDASDALPSQIITDEILLHERKLLRQQADTAQAFTPKPATLAAIDHPVAIVGGGLASAN 231

Query: 281 LATTLARRGVAVTLYCADEKPAQGASGNRQGAVYPLLSGDHNAVSRVFAPAFLFARQWIE 340
           L  +LA RG + TL+C D +  QGASGNRQGA+YPLL+ +++ +SR F  AFLF+R+ IE
Sbjct: 232 LMLSLAERGQSSTLFCKDNELGQGASGNRQGAIYPLLTPENDELSRFFQQAFLFSRRRIE 291

Query: 341 QAAEQINFD-----------HDWCGVTQLMWDEKATDKLKSMLEG-NFPTQLVHGLSAEQ 388
             ++    D           HD+CGV Q   DE++  +L  +++  ++P ++ + + A +
Sbjct: 292 ALSQASMMDTNAAPHVTVISHDFCGVLQTGHDERSQQRLDKIIQSQDWPAEIAYAVDANE 351

Query: 389 TNQQVGVPVDKASVHYPLGGWLSPAELTQGLIHLLEQQGKLTAHYQTPIDALTWQPETQL 448
            N+   + +DKA   YPLGGW+ P E  +  +    Q   +  H+ T I  +  + + Q 
Sbjct: 352 ANEIAQIGIDKAGFFYPLGGWVCPFEYAKAAVDKASQLANVQCHFNTEITEI--ECDAQA 409

Query: 449 WQLRS-GDTLMSHQCVVIASGHQFDSLSQTAELPLGKVKGQVSHIPTTETLSKINSVLCY 507
           W L S G      + +V+A+G Q    S +  L +   +GQVSH+P    LS++ +VLC 
Sbjct: 410 WYLHSQGQRFGPFRQLVLANGAQLTQFSASERLQISPFRGQVSHVPAQFKLSQLATVLCA 469

Query: 508 DGYMTPVSQQNGYHCIGASYDRQHLDATFDPQAQHENAQKLIHCLPEQTWPLEVDVSGNQ 567
           +GY+TP  Q  G HC+GASY +      F PQ Q EN  K+    P Q W  ++D+SGN 
Sbjct: 470 NGYLTPSHQ--GLHCLGASYVKAAEHFDFCPQEQRENLGKMQESYPNQAWVDDIDISGNS 527

Query: 568 SRQGVRCVSRDHLPFVGNVGEFSKITEQY--RDLAQQH--------QAEPIALYPQLYAL 617
           +R GVR V+RDH P +G   + ++I  +Y    L QQ         Q  P  +   LY L
Sbjct: 528 ARVGVRMVTRDHFPMMGCAPDVAEILARYELHQLNQQQAEQSKHYWQTTPAPILDGLYIL 587

Query: 618 VGLGSRGLSSAPLMAELLASQMCGDPMPLGVDLLEQLHPSRMWVRKLRKGKAL 670
            GLGSRGLSS PL AE LA+Q+ G+P+PL    L +L+P+RMW+RKL KGKAL
Sbjct: 588 GGLGSRGLSSGPLAAECLAAQLTGEPLPLDWSTLNKLNPNRMWLRKLLKGKAL 640