Pairwise Alignments

Query, 292 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  179 bits (454), Expect = 7e-50
 Identities = 103/293 (35%), Positives = 171/293 (58%), Gaps = 6/293 (2%)

Query: 1   MDIRALRYFVELVNQQSFTKASERLFVTQPTISKMIRNLEQELEQPLLHR--EGRRFWLT 58
           MD++ LRYF+E+++   F KASE++ +TQP +SK +R LE+EL+  LL R   G +  LT
Sbjct: 1   MDLKVLRYFIEIIDAGGFGKASEKVHLTQPALSKAVRQLEEELDLVLLERGKRGTQVKLT 60

Query: 59  EAGEIVYQRAQQILTQMQQLDAELTDLNQLHRGHLRLGIPPM-VGHVYARLFRQYRQTYP 117
           +AGE+VY+  +++L   Q++ AEL+    L  G LRLG+ P+    ++A +  +YRQ YP
Sbjct: 61  QAGEVVYRHGKELLAGRQRMLAELSAQRSLTAGELRLGLAPLGSAEIFAPVIAKYRQQYP 120

Query: 118 NVELTVVEYGGRKIEQAILDGDIDVAVTMLSPNQHPDLNTVALDHYPIFAVVPDIPLWRS 177
            +E+ ++  GG +   AI  G+I++A  ++  N     + + + + P+  V+P      +
Sbjct: 121 QIEMHLLVRGGVEQTLAIQKGEIELATGII--NFDDGYDGIRVFNDPMVVVLPKENPLTA 178

Query: 178 LTTLTWAQISQEPFYLFTHEFTLSDHIHTCCQAAGYTPQVAARSSQWDFLVALVKSGVGV 237
              L+   +  EP  +F  E+TL   +   CQ AG++PQ   R SQ DF +ALV +G GV
Sbjct: 179 REMLSIHDLIDEPQVMFETEYTLHQLVLNACQHAGFSPQNITRVSQADFGIALVAAGTGV 238

Query: 238 CFLPAPLCQRIQGDGVLIYPI-TPAIDWRLGVVWHRERYVSKTAEAWIALCRR 289
             LP  + +R    GV+  P+ +  + W L + W +E+ +S  A+A IAL ++
Sbjct: 239 MILPRSIARRYSVSGVVNIPLASDELRWELSLFWRKEQVLSFAAQAMIALVKK 291