Pairwise Alignments

Query, 588 a.a., succinate dehydrogenase flavoprotein subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., fumarate reductase subunit A from Methanococcus maripaludis JJ

 Score =  283 bits (725), Expect = 1e-80
 Identities = 192/552 (34%), Positives = 291/552 (52%), Gaps = 43/552 (7%)

Query: 9   DAVVIGAGGAGMRAALQISEQGLTCALLSKVFPTRSHTVSAQGGITVALGNSHKDDWQWH 68
           D ++IG GGA  RAA++  ++ +  A    +F     TV A+GG    L  + KD ++ H
Sbjct: 4   DVLIIGGGGAAARAAIECGQKNVVIASKG-LFGKSGCTVMAEGGYNAVL--NEKDSFEKH 60

Query: 69  MYDTVKGSDYIGDQNAIEYMCKNGPESVIELERMGLPFSRFENGTIYQRPFGGQSKEFGG 128
             DT+KG  YI ++  ++ + KN P     LE+ G  F R E+    QRPFGGQS     
Sbjct: 61  YSDTMKGGGYINNKKLVDVLVKNAPNEFKNLEKFGCIFDRSESAEFAQRPFGGQSFN--- 117

Query: 129 EQAARTAAAADRTGHALLHTLYQQ-NVKHKTTIFSEWYALDLVKNQ---DGAVL----GC 180
               RT  + DRTGH ++  L +  N   +  I  +  A+ L+ ++   +G  L    G 
Sbjct: 118 ----RTCYSGDRTGHEMIAGLMEYLNKFERIKILEDTMAIKLIVDEVEENGKKLKKCFGA 173

Query: 181 TAICMETGEICYFKAKATVLATGGAGRIYASTTNAHINTGDGVGMALRAGVPMQDMEMWQ 240
             + +  G+I    AK+T+LATGGAG+IY  T+N     GDG  +A R GV + DMEM Q
Sbjct: 174 VFLDLLNGDIYPVYAKSTILATGGAGQIYPITSNPKQKVGDGFAIAYREGVELVDMEMVQ 233

Query: 241 FHPTGIAGAGVLVTEGCRGEGGYLLNKDGERFMERYAPNAKDLAGRDVVARSMMIEIREG 300
           FHPTG+ G G+LVTE  RGEGG L NK+ ERFM+ Y     +L+ RDVVA+++  EI+EG
Sbjct: 234 FHPTGMLGTGILVTEAVRGEGGILYNKNKERFMKNYDSKRMELSTRDVVAKAIYNEIQEG 293

Query: 301 RGCDGPWGPHIKLKLDHLGRDVLESRLPGICELSRTFAHVDPVKEPIPVIPTCHYMMGGV 360
           RG DG     + L + HL  +V++ +L  +         VD  KEP+ V PT H+ MGG+
Sbjct: 294 RGIDG----GVYLDVTHLEPEVIKEKLETMFS-QFMLVGVDIRKEPMKVAPTAHHFMGGI 348

Query: 361 PTQVSGQAIKQDSHGKDVEVQGLFACGEIASVSVHGANRLGGNSLLDLVVFGRATGLHLG 420
                     + +   +  + GLFACGE+A   +HGANRLGGN+L +  VFG   G +  
Sbjct: 349 ----------KINENCETNISGLFACGEVAG-GLHGANRLGGNALAETQVFGSIAGRNAL 397

Query: 421 ETLRAQAEARPATASDIEASLARTMRWEN-SKGGEDPVVIRKDLQRCMQNNFSVFREGKA 479
                + +      S +E  + +     N S  G++   +  +L+  M +  S+ R+   
Sbjct: 398 IYAEEKVDISKVYNS-VEKYIEKLKNTVNESNSGDNVYSLIDELKNTMWDFVSISRDENG 456

Query: 480 MAEGLEELKVIRERLKNAHLADKSTEFNTQRIECLELDNLMETAFSTAVAANYRTESRGA 539
           +   LE++  I  +     L +   +F+ +    LEL+N++  +     +A  R E+RGA
Sbjct: 457 LKTALEKINEIDGK---KVLINGIVDFSKK----LELENMILVSKIVINSAILRKETRGA 509

Query: 540 HARFDYPERDDE 551
           H R D P+ +D+
Sbjct: 510 HFRSDCPKTNDK 521