Pairwise Alignments

Query, 297 a.a., zinc ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., periplasmic solute binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 51.2 bits (121), Expect = 3e-11
 Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 32/245 (13%)

Query: 6   SRYFLLTVAAL---FAQSASAIEVLTSIKPIQMITYELMLGTGTPDVLLPSGAS----PH 58
           S Y    VAAL   FA  A A   + + +P     Y  +     PD  + +  +    PH
Sbjct: 5   SNYLKAGVAALALSFACGAQAKLNIFACEP----EYAALAKELAPDAKIYAATTAMQDPH 60

Query: 59  DYALRPSDVKRIQQADLVIWFGQDLEPFMSKLLEGRTS--------------ALTLSQVP 104
               RPS + +++QADL +  G DLE     +L+ +++              A     + 
Sbjct: 61  QVQARPSLIAKMRQADLAVCAGADLEVGWLPMLQMKSANAQVRSTDKGLFYAAEHTQTLD 120

Query: 105 NLALREYGEEEQHEHDGHHHGHYDPHFWLGIGPVGQVASAITAKLIELDADQQQQYQDNL 164
            LA  +    + H   G+ H H+DP   L      +VA A++AK++ LD D +  Y+  L
Sbjct: 121 KLAQVDRSMGDVHAQ-GNPHLHFDPERLL------EVAKALSAKMVSLDPDNRAAYESAL 173

Query: 165 VRFLANLAEQDNTIGEKLKPVTTVPYYVFHDAYGYFEQHFALNNLGHFTVSPERKPGAKT 224
             F             +  P+       +H ++ Y      +  +G     P   P    
Sbjct: 174 ADFSQRWQAAIAGWQSQAAPLKGKKVIAYHTSFRYLFNWLGMEQVGDLEPKPGLPPSTGH 233

Query: 225 LIAIK 229
           L +++
Sbjct: 234 LASLQ 238