Pairwise Alignments

Query, 297 a.a., zinc ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., periplasmic solute binding protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  103 bits (257), Expect = 6e-27
 Identities = 83/293 (28%), Positives = 135/293 (46%), Gaps = 25/293 (8%)

Query: 18  AQSASAIEVLTSIKPIQMITYELMLGTGTPDVLLPSGASPHDYALRPSDVKRIQQADLVI 77
           A +A+A++V  SI P +     +        V++P GA PH Y  +PS ++ +  A L +
Sbjct: 59  ASAAAAVQVAVSILPQKYFIQRIAGDLAEVTVMVPPGADPHTYEPKPSQMRGLASAKLYM 118

Query: 78  WFGQDLE-PFMSKLLEGRTSALTLSQVPN----LALREYGEEEQHE---HDGHHHGHY-- 127
             G   E  ++ +++      +T+ ++      L   E+  +E HE    D HHH H   
Sbjct: 119 TIGVPFEKSWLDRIMAAGGKDMTVVRMEKGIDLLPQDEHVLDEGHEGEAADAHHHDHEGG 178

Query: 128 DPHFWLGIGPVGQVASAITAKLIELDADQQQQYQDNLVRFLANLAEQD---NTIGEKLKP 184
           DPH WL    V  +A +I A L++ D+     Y+ N   F+  L E D   N + E + P
Sbjct: 179 DPHIWLSPALVKMMAGSIKAALVKADSAHAAVYRANHDAFVRELDELDLHINGLFENV-P 237

Query: 185 VTTVPYYVFHDAYGYFEQHFALNNLGHFTVSPE-RKPGAKTLIAIKKTLNDQLAKCVFSE 243
                + VFH A+ YF  ++   NL    +  E R+PG + L  I +    +  + +F +
Sbjct: 238 ENRRRFMVFHPAWSYFAHNY---NLREVAIEVEGREPGPRQLTRIVEFAKKEKIEALFVQ 294

Query: 244 PQFEPAIIETVVRGTSAKIGVLDPLGISIELQAGSYFAFLNSLAESYYACLSQ 296
           PQF     ET+ R   AK+   DPL       A  + A +  +AE+    L+Q
Sbjct: 295 PQFSKRGAETIARNVGAKLIEADPL-------AEDWAANIRRVAEAMAQTLNQ 340