Pairwise Alignments
Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056
Subject, 1046 a.a., sensor histidine kinase (RefSeq) from Shewanella amazonensis SB2B
Score = 73.2 bits (178), Expect = 1e-16
Identities = 103/446 (23%), Positives = 181/446 (40%), Gaps = 56/446 (12%)
Query: 392 EHLWIATEKGLVRYNLSRRSIDTPNLPLPLLQTAIQHLSLDSDGNLW-GTSDYQIWSYSL 450
E LW G V+ + S + +T ++ ++ L D G++W G ++ Y
Sbjct: 415 EGLWHLIGNGTVKAHFSHQPEETGSIGKGFVRV----LQPDDSGDVWVGIGGDGLYKYHP 470
Query: 451 SEKNYRDYGSEWMVK-AFSPSRITLLAAVKDGIVIGTEHGAYSLLEK--------QIRFD 501
+ Y + V + S + IT L + +GT +L +K Q+
Sbjct: 471 DSGTFSSYTHDPSVPDSLSGNYITSLLIDGPYLWVGTRSNGLNLCQKDSMSCQRLQVHNS 530
Query: 502 FSSHRYGEILQVAEDSSGHIWLVGSYGVFQWRKDQPEAVTVE--------LIEENIQPLC 553
+H Y I +A+D G+IW+ G + V E L ++I+ +
Sbjct: 531 GLNHFY--ISDIAKDDLGNIWVGTDGGGLHKAEFHRTGVKTEVRITPEPGLAADSIKSIL 588
Query: 554 IAESKQGMWLISTKGI-SYYRNQELTKHFGAPYGLISNEFLSASCAVGEEQDNSSLIIGS 612
S + +W ++ G+ SY+ NQ K F + N +G S G
Sbjct: 589 PGASGE-VWFTTSDGLFSYHSNQ---KRFHKATDRVLN-------GLGGFSQRSRASTG- 636
Query: 613 QFGVVKTNTEELAVSNLPNIQ------VTFSQ-VSVNHTTKLLGYRMSEP--LKIAYGDS 663
+F ++ TN S++ N++ V F+Q VS + +L + +P + + +G
Sbjct: 637 EFNLLGTNNGVYLFSSISNVEPETQFPVRFTQIVSDSLANPILNTAIQDPFQMSVPWGGW 696
Query: 664 ISFQFGALP-SSRSQSLEYKLNDEQQWQRFD-WALLNFDQLLPGKYRLKVRSANPTQRYR 721
++ +F L S + S +Y+++ E QW + LNF +L PG +RL+VR Q +
Sbjct: 697 LNVEFALLDFGSSAHSYQYRMSSESQWISLNNMHHLNFYKLDPGVHRLEVRGRGINQAWS 756
Query: 722 TEALFDFEVLQPWYMTSIALVGYVLSVLGLLA-------LALWWRTRMILAANRKLKAQV 774
A V+ PW+ + +G +L + L+A +A W R L A ++ K V
Sbjct: 757 QPATLHLTVIPPWWRNT-TYIGLLLVCIALVAVSYHRFRMARWERYTRHLNALKEEKLAV 815
Query: 775 ELKTSQLRHQSKIVLSNNHQLRKQLQ 800
K Q K L +LQ
Sbjct: 816 IEKLRQNEQHLKSAFEGMRNLATRLQ 841
Score = 48.9 bits (115), Expect = 2e-09
Identities = 74/361 (20%), Positives = 139/361 (38%), Gaps = 81/361 (22%)
Query: 245 LDRIGSSHVLSIAE-TEKEYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMV 303
++ + + V +A+ + E W+ T+ GL + TG++ + ++ + +L +Y +
Sbjct: 122 INSLSNDSVYDVADGPDGELWVATQIGLNRLNPATGQVRRYLKDDTNAASLPSNYVYTLF 181
Query: 304 NDFQGGMWIGT-DKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLAI-T 361
D +WIGT G+ Y++ Q F + D + + DG YL + T
Sbjct: 182 VDSSNRLWIGTIGGGLAYWAGETQGFISLELPNVITD-------VFSIVEQDGKYLWVGT 234
Query: 362 AQGLYNFNFSDELRKHLIYPGKVN--DFVIAQEHLWI------ATEKGLVRYNLSRRSID 413
QGL D L I P + N + +I HL +GL YN +
Sbjct: 235 RQGLLRITL-DNLLVRRIQPDQGNEPELMIISLHLDANQLVLGTFGQGLKFYNTDTNQLS 293
Query: 414 TPNLPLPLLQTAIQHLSLDSDGNL----WGTSDYQIWSYSLSEKNYRDYGS--------- 460
+ +P + I + DS G L WG Y++ ++E+N D G+
Sbjct: 294 HASQDIPGAKDTITSMVKDSTGQLFYATWGRGAYKL---DVTERNKSDDGTAKRTSLSLP 350
Query: 461 -----------------------EWM------VKAFSPSR--------ITLLAAVKDGIV 483
W+ + F+PS +++ + D ++
Sbjct: 351 NVAAMYAKSGSNKAWVGSFSDGLHWLDLDTQRLNRFTPSTSANNINGVLSIASFGADELL 410
Query: 484 IGTEHGAYSLL-EKQIRFDFS-------SHRYGEILQVAEDSSGHIWL-VGSYGVFQWRK 534
+GT G + L+ ++ FS S G + + D SG +W+ +G G++++
Sbjct: 411 VGTSEGLWHLIGNGTVKAHFSHQPEETGSIGKGFVRVLQPDDSGDVWVGIGGDGLYKYHP 470
Query: 535 D 535
D
Sbjct: 471 D 471
Score = 41.2 bits (95), Expect = 4e-07
Identities = 47/162 (29%), Positives = 66/162 (40%), Gaps = 31/162 (19%)
Query: 299 IYAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYL 358
I A++ D QG MW+GT G+F+Y + Q ++ A TP G IAAL+ YL
Sbjct: 37 ISAILIDKQGFMWLGTQDGLFFYDSY--QLEKFRPDA------DTP-GTIAALDIRNLYL 87
Query: 359 --------AITAQGLYNFN-----FSDELRKHLIYPGKVNDFVI-----AQEHLWIATEK 400
+ + GL FN F++ ND V LW+AT+
Sbjct: 88 SRDNSLWISTNSGGLSRFNPDTRTFTNYRHNSEDINSLSNDSVYDVADGPDGELWVATQI 147
Query: 401 GLVRYNLS----RRSIDTPNLPLPLLQTAIQHLSLDSDGNLW 438
GL R N + RR + L + L +DS LW
Sbjct: 148 GLNRLNPATGQVRRYLKDDTNAASLPSNYVYTLFVDSSNRLW 189
Score = 33.1 bits (74), Expect = 1e-04
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 23/158 (14%)
Query: 264 WIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGTDK-GIFYYS 322
W+GT+DGLF Y + + +++ A L + + D +WI T+ G+ ++
Sbjct: 49 WLGTQDGLFFYDSYQLEKFRPDADTPGTIAALDIRNLYLSRD--NSLWISTNSGGLSRFN 106
Query: 323 LFGQQFTRY-----PAQALSNDGSKTPIGKIAALNSDGDYLAITAQGLYNFN-FSDELRK 376
+ FT Y +LSND A DG+ T GL N + ++R+
Sbjct: 107 PDTRTFTNYRHNSEDINSLSNDSVYD-----VADGPDGELWVATQIGLNRLNPATGQVRR 161
Query: 377 HLIYPGKVND---------FVIAQEHLWIATEKGLVRY 405
+L FV + LWI T G + Y
Sbjct: 162 YLKDDTNAASLPSNYVYTLFVDSSNRLWIGTIGGGLAY 199
Score = 30.4 bits (67), Expect = 8e-04
Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 246 DRIGSSHVLSIAETEKEYWIGTE-DGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVN 304
D + +++ S+ W+GT +GL + + +L+ +N L I +
Sbjct: 486 DSLSGNYITSLLIDGPYLWVGTRSNGLNLCQKDSMSCQRLQVHNS---GLNHFYISDIAK 542
Query: 305 DFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQG 364
D G +W+GTD G + + F + + + G K + G+ T+ G
Sbjct: 543 DDLGNIWVGTDGGGLHKAEFHRTGVKTEVRITPEPGLAADSIKSILPGASGEVWFTTSDG 602
Query: 365 LYNFNFSDELRKH 377
L++++ S++ R H
Sbjct: 603 LFSYH-SNQKRFH 614