Pairwise Alignments

Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1349 a.a., hybrid sensor histidine kinase/response regulator from Pedobacter sp. GW460-11-11-14-LB5

 Score = 70.5 bits (171), Expect = 9e-16
 Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 9/147 (6%)

Query: 971  LHVLALKERNVIELAWPLATLPELETIHKPEEGEQAAKVGIDEVEKEWLSKVEKLIELHY 1030
            + VL L  RN+++    L      + +  P + E A+       E+++L+++ +LIE   
Sbjct: 1205 IQVLELSIRNLLQGREELRQKYIKQIMLNPRKLETASP------EEKFLNRLMQLIEDGM 1258

Query: 1031 SDPNFTTSTAAQALYVSERSLQRRFKAATGKTFKESLNEVRLEKACQSLLSGAK--IAQV 1088
             DP F        + +S+  L ++ KA TG +  + +   RL++A Q LL+  K  IA+V
Sbjct: 1259 EDPEFNVGGLVDQIGMSQTVLYKKIKALTGLSISDFIKSQRLKRAAQ-LLNDHKMNIAEV 1317

Query: 1089 AFDCGFNDPSYFSQRFKHHFGLSPSQF 1115
            A+  GFND  YFS+ F+  FG++PS++
Sbjct: 1318 AYSVGFNDRKYFSKEFRKQFGVAPSEY 1344



 Score = 55.5 bits (132), Expect = 3e-11
 Identities = 129/590 (21%), Positives = 224/590 (37%), Gaps = 63/590 (10%)

Query: 264 WIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGT-DKGIFYYS 322
           WI T +GL +    T      + +  +  +L    I  +  D QG +WIGT   G+    
Sbjct: 270 WIATMNGLNILDTQTLGFTSYKHDADNRKSLSDNSIKEIFQDDQGSIWIGTMFGGVNVAH 329

Query: 323 LFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQGLYNFNFSDELRKHLIY-- 380
                FT +      N  S      IAA N    ++    QGL  +N    L K  I   
Sbjct: 330 RNTIPFTVFKYSKYRNSISSDISSVIAADNDQNLWIGTEGQGLNFYNVKTGLFKKYINDP 389

Query: 381 --PGKVNDFVI------AQEHLWIATEKGLVRYNL--SRRSIDTPNLPLPLLQTAIQHLS 430
             PG +++  I       +  +WI   +G +   +  + +    P     L Q  +  +S
Sbjct: 390 RDPGSLSNNTIKAIFNDRKGRIWIGLYQGGLELFIPSTGKFKHYPPGRNGLSQGYLSSIS 449

Query: 431 LDSDGN-LWGTSDYQIWSYSLSEKNYR---DYGSEWMVKAFSPSRITLLAAVKDGIVIGT 486
            D  G  L GTS   +  +   +++++   D     +  + S  R       K  + +GT
Sbjct: 450 EDDQGRLLLGTSSKGLNIFDPEKESFQLIDDQPGHGLKLSSSYIRFA-YQDTKKNLWVGT 508

Query: 487 EHGAYSLLEKQIRFDFSSH--------RYGEILQVAEDSSGHIWLVGSY--GVFQWRKDQ 536
             G   L      F   S         +  +I  + ED  GHIW VG+   G+  +  D 
Sbjct: 509 PRGLNFLPPGANHFSVFSRDDKTKGSLKSSQITCLWEDRLGHIW-VGTMRGGLSLYHPDS 567

Query: 537 PEAVTVE----LIEENIQPLCIAESKQGMWLISTKGISYY-RNQELTKHFGAPYGLISNE 591
               T      L  +NI  + + ++   +W+ + +G+S +   + + K++    GL +NE
Sbjct: 568 KSFSTYTRAQGLASDNIIDV-LDDNDGNLWISTDRGLSKFDYKRGVFKNYNTGDGLPTNE 626

Query: 592 FLSASCAVGEEQDNSSLIIGSQFGVVKTNTEELAVSNL------PNIQVTFSQVSVNHTT 645
           F   S        +  L  GS  G+V     E+  + L        +++    V +N   
Sbjct: 627 FNVNS---AYRDIHGKLYFGSYDGLVVFTPREITENTLIPRTVFSGLKLFNKPVGINEDN 683

Query: 646 KLLGYRMSEPLKIAY---GDSISFQFGALPSSRSQ--SLEYKLND-EQQWQRFDWALLNF 699
            LL   +S    I +    +  S +F +L   + Q     YKL   E+ W        ++
Sbjct: 684 GLLKQDISFTKGITFTAEQNIFSLEFVSLNYVQPQRNRYAYKLEGFEKDWNYVTIPSASY 743

Query: 700 DQLLPGKYRLKVRSANPTQRY-RTEALFDFEVLQPWYMTSIALVGYVLSVLGLLALALWW 758
             L  G Y+L V+ +N    + +   + +  VL P + T  A   Y ++   LL   L +
Sbjct: 744 TNLPSGNYKLLVKGSNNDGLWSKAPVVMEIRVLPPLWQTWWAYTLYFIAGGLLLYFVLRF 803

Query: 759 RTRMILAANRKLKAQVELKTSQLRHQSKIVLSN-------NHQLRKQLQL 801
             R      +KLK ++  +      QS++           +H++R  L L
Sbjct: 804 TRR-----QQKLKTELYYEHLNSERQSELYQMKLDFFTRISHEIRTPLTL 848



 Score = 52.4 bits (124), Expect = 2e-10
 Identities = 77/371 (20%), Positives = 143/371 (38%), Gaps = 60/371 (16%)

Query: 248 IGSSHVLSIAETEKEY-WIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKK--IYAMVN 304
           +  S VLSI +  + Y W GT D L  Y    GK V++   + D  A +  +  IYA+  
Sbjct: 19  LSQSTVLSICKDSRGYMWFGTRDCLNRYD---GKSVKIYRTDPDNPASISTEDYIYALEE 75

Query: 305 DFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQG 364
           D Q  +WIGT  G+  Y      F R      + +     I      +  G     T QG
Sbjct: 76  DRQKNLWIGTQNGLNRYIPEKDAFERIAFDPKNANSISDKIILSIYADRSGKVWFGTNQG 135

Query: 365 LYNFNFSDELRKHLIYP-------GKVNDFVIAQEHLWIATEKGLVRYNLSRRSIDTPNL 417
           L         +   IY             F  ++ ++W+ T  GL R +         + 
Sbjct: 136 LSMLENGSSRKFKKIYQKDGLAGNSVYTIFEDSKGNIWVGTTTGLSRLSFKEGKYHIQSF 195

Query: 418 ------PLPLLQTAIQHLSLDSDGNLWGTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSR 471
                 P  +   +I+ ++ D  G +W  S+ +  +  L + +       +   A  P+ 
Sbjct: 196 YHRAGDPGSISGNSIRTIAEDGKGRIWIGSESEGLNLFLPQSH---SFKRFRYSALQPNA 252

Query: 472 IT------LLAAVKDGIVIGTEHGAYSLLEKQIRFDFSSHRY----------GEILQVAE 515
           ++      ++   K  + I T +G  ++L+ Q    F+S+++            I ++ +
Sbjct: 253 LSNDIVRKIMPDGKGNLWIATMNG-LNILDTQ-TLGFTSYKHDADNRKSLSDNSIKEIFQ 310

Query: 516 DSSGHIWLVGSYG-------------VFQWRKDQPEAVTVELIEENIQPLCIAESKQGMW 562
           D  G IW+   +G             VF++ K +        I  +I  +  A++ Q +W
Sbjct: 311 DDQGSIWIGTMFGGVNVAHRNTIPFTVFKYSKYR------NSISSDISSVIAADNDQNLW 364

Query: 563 L-ISTKGISYY 572
           +    +G+++Y
Sbjct: 365 IGTEGQGLNFY 375