Pairwise Alignments
Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056
Subject, 1373 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5
Score = 78.2 bits (191), Expect = 4e-18
Identities = 38/109 (34%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Query: 1011 IDEVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVSERSLQRRFKAATGKTFKESLNEV 1070
I+ E+ +L+K+ +LIE +DP+F T + + +S+ L ++ +A T + + + +
Sbjct: 1264 INTTEQHFLNKIIQLIEDRIADPDFDVPTLSAEVGMSQPVLYKKIRALTDLSVNDFIKSL 1323
Query: 1071 RLEKACQSLLSGA-KIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIED 1118
R+++A Q L G IA++A+ GFND YFS FK HFG +PS+F+ +
Sbjct: 1324 RIKRAAQLLKQGTGNIAEIAYSVGFNDRKYFSSEFKKHFGKTPSEFMSN 1372
Score = 77.0 bits (188), Expect = 9e-18
Identities = 134/620 (21%), Positives = 235/620 (37%), Gaps = 85/620 (13%)
Query: 248 IGSSHVLSIA-ETEKEYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDF 306
I S++V I + E + WIGT G+ +Y+ T L + +D +L +Y + D
Sbjct: 290 ISSNNVRKIMMDQEGKLWIGTLHGINIYNPATKNFSSLHNIPEDPTSLSQNSVYDIYQDR 349
Query: 307 QGGMWIGTDKGIFYYSLFGQQFTRYP------AQALSNDGSKTPIGKIAALNSDGDYLAI 360
QG +W+GT YY + Y + N S + I ++
Sbjct: 350 QGIIWVGT-----YYGAINMVYPNYTPFKVYRSTTAPNGLSSNVVSSIMEDQHQNLWIGT 404
Query: 361 TAQGLYNFNFSDELRKHLIYPGKVND----------FVIAQE--HLWIATEKG------- 401
+GL ++ ++ Y ND VI + +W+ T G
Sbjct: 405 EGEGLNYYDRKNDTFTR--YKNNPNDPKSLSANLVKSVIRDKKNRIWVGTHYGGLNLFQP 462
Query: 402 ----LVRYNLSRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSY-SLSEKNYR 456
VRY ++ DT ++ I L DS G W ++ + S+ S + K R
Sbjct: 463 ETKTFVRY--TKHKNDTSSIS----NDEITALFEDSYGRFWVGTNGGLNSFNSTTGKFIR 516
Query: 457 DYGSEWMVKAFSPSRITLLAAVKDGIVIGTEHGAYSLLEKQIRF------DFSSHRYGEI 510
+ V + + + K + + T G Y L + RF D +Y EI
Sbjct: 517 N-----RVNGLTDAVHYIFEDAKRCLWVATNSGLYQLKKDSQRFISRVAADPEILKYNEI 571
Query: 511 LQVAEDSSGHIWLVGSY-GVFQW---RKDQPEAVTVELIEENIQPLCIAESKQGMWLIST 566
+ D +G++ + S+ G+F+ R T + + N + + +W+ +
Sbjct: 572 TCLTTDKAGYLLMGTSHNGLFRLNPGRHSYSRMTTFDGLPSNNIMGILEDDFNNLWITTD 631
Query: 567 KGISYYRNQELT-KHFGAPYGLISNEFLSASCAVGEEQDNSSLIIGSQFGVVKTNTEELA 625
KG+ Y ++ T K + GL NEF S + G G+V E+
Sbjct: 632 KGLCKYNPRQKTFKTYNIKDGLPGNEFNYKSFL---RDSKGAFFFGGLSGMVSFFPNEIK 688
Query: 626 VS-NLPNIQVT----FSQVSVNHTTK-LLGYRMSEPLKIAYGD-----SISFQFGALPSS 674
+ N P + T F++ HT LL +S I + SI F S
Sbjct: 689 ENKNTPPVIFTGLKLFNKPIALHTGDGLLKQNISTIKSITFESDQNVFSIDFTLLNFIKS 748
Query: 675 RSQSLEYKLND-EQQWQRFDWALLNFDQLLPGKYRLKVRSANPTQRYRTE-ALFDFEVLQ 732
YKL E+ W D ++ L PG Y L V+ +N + E + D ++L
Sbjct: 749 DKNRYAYKLGGFEKNWNYVDIPSASYTNLSPGNYTLMVKGSNNDGLWTNETSTLDIKILP 808
Query: 733 PWYMTSIALVGYVLSVLGLLALALWWRTRMILAANRKLKAQVELKTSQLRHQSKIVLSNN 792
P+Y T A Y+ A++ + +++ A K + ++ H+ + + +
Sbjct: 809 PFYRTWWA---YLFYFCAFAAISFVFIRYLLIKAVLKKEKEIN------EHKLEFFTNIS 859
Query: 793 HQLRKQLQLHHTILGNVLDN 812
H++R L L L +++N
Sbjct: 860 HEIRTPLTLIVGPLDKLIEN 879
Score = 53.9 bits (128), Expect = 8e-11
Identities = 95/414 (22%), Positives = 158/414 (38%), Gaps = 67/414 (16%)
Query: 251 SHVLSIAETEKEY-WIGTEDGLFVYSFITGKIVQLESNNQDGY--ALLGKKIYAMVNDFQ 307
S VLSIA+ + + W GT GL Y + K+ E NN+ A I A+ +
Sbjct: 60 SSVLSIAQDARGFIWFGTRFGLNKYDSKSFKVYYHEENNEKSLSNASFLSSILALKD--- 116
Query: 308 GGMWIGTDKGIFYYSLFGQQFTRY-----PAQALSNDG---------SKTPIGKIAALNS 353
G + IGT G+ Y+ F Y ++SN G ++ IG LN
Sbjct: 117 GTLLIGTSNGLNKYNEGDDNFDHYVHNSKDPNSISNAGISCIFQDKKNRVWIGTTNGLN- 175
Query: 354 DGDYLAITAQGLYNF-NFSDELRKHLIYPGKVNDFVIAQEH---LWIATEKGLVRYNLSR 409
++ G Y F F D+ ++ + + I ++H LW++T GLV
Sbjct: 176 -----LLSTNGKYKFKRFLDKQKQ------RQQIYAITEDHNGTLWLSTTYGLVNMRFKD 224
Query: 410 RSI------DTPNLPLPLLQTAIQHLSLDSDGNLW-GTSDYQIWSYSLSEKNYRDYG-SE 461
I D + I + D + NLW GT + +LS + Y S
Sbjct: 225 GKIHLRYFKDFSEELNKAIDNHITTMVEDRENNLWIGTKQTGVSKLNLSTETITSYQYSS 284
Query: 462 WMVKAFSPSRITLLAAVKDG-IVIGTEHG--AYSLLEK------QIRFDFSSHRYGEILQ 512
S + + + ++G + IGT HG Y+ K I D +S +
Sbjct: 285 LNPAGISSNNVRKIMMDQEGKLWIGTLHGINIYNPATKNFSSLHNIPEDPTSLSQNSVYD 344
Query: 513 VAEDSSGHIWLVGSYGVFQW-------RKDQPEAVTVELIEENIQPLCIAESKQGMWL-I 564
+ +D G IW+ YG K + N+ + + Q +W+
Sbjct: 345 IYQDRQGIIWVGTYYGAINMVYPNYTPFKVYRSTTAPNGLSSNVVSSIMEDQHQNLWIGT 404
Query: 565 STKGISYY--RNQELTKHFGAPYGLISNEFLSASCAVGEEQDNSSLI-IGSQFG 615
+G++YY +N T++ P + LSA+ +D + I +G+ +G
Sbjct: 405 EGEGLNYYDRKNDTFTRYKNNPN---DPKSLSANLVKSVIRDKKNRIWVGTHYG 455
Score = 42.0 bits (97), Expect = 3e-07
Identities = 100/483 (20%), Positives = 179/483 (37%), Gaps = 117/483 (24%)
Query: 190 TNVGVYLSDEQGFA---HVKNSGKHFIQKLYFSH----KRRELLVGSKRGALVID----- 237
T G+ D + F H +N+ K + S K LL+G+ G +
Sbjct: 77 TRFGLNKYDSKSFKVYYHEENNEKSLSNASFLSSILALKDGTLLIGTSNGLNKYNEGDDN 136
Query: 238 ----IENKRPPLDRIGSSHVLSIAETEKE-YWIGTEDGLFVYSFITGKIVQ---LESNNQ 289
+ N + P + I ++ + I + +K WIGT +GL + S GK L+ Q
Sbjct: 137 FDHYVHNSKDP-NSISNAGISCIFQDKKNRVWIGTTNGLNLLS-TNGKYKFKRFLDKQKQ 194
Query: 290 DGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSL-FGQQFTRYPAQALSNDGSKTPIGKI 348
++IYA+ D G +W+ T G+ G+ RY + S + +K I
Sbjct: 195 R------QQIYAITEDHNGTLWLSTTYGLVNMRFKDGKIHLRY-FKDFSEELNKAIDNHI 247
Query: 349 AALNSDGD---YLAITAQGLYNFNFSDE---------LRKHLIYPGKVNDFVIAQE-HLW 395
+ D + ++ G+ N S E L I V ++ QE LW
Sbjct: 248 TTMVEDRENNLWIGTKQTGVSKLNLSTETITSYQYSSLNPAGISSNNVRKIMMDQEGKLW 307
Query: 396 IATEKGLVRYNLSRRSIDT----PNLPLPLLQTAIQHLSLDSDGNLWGTSDY-------- 443
I T G+ YN + ++ + P P L Q ++ + D G +W + Y
Sbjct: 308 IGTLHGINIYNPATKNFSSLHNIPEDPTSLSQNSVYDIYQDRQGIIWVGTYYGAINMVYP 367
Query: 444 -------------------------------QIWSYSLSE-KNYRDYGSEWMV------- 464
+W + E NY D ++
Sbjct: 368 NYTPFKVYRSTTAPNGLSSNVVSSIMEDQHQNLWIGTEGEGLNYYDRKNDTFTRYKNNPN 427
Query: 465 --KAFSPSRI-TLLAAVKDGIVIGTEHGAYSLLEKQ----IRF-----DFSSHRYGEILQ 512
K+ S + + +++ K+ I +GT +G +L + + +R+ D SS EI
Sbjct: 428 DPKSLSANLVKSVIRDKKNRIWVGTHYGGLNLFQPETKTFVRYTKHKNDTSSISNDEITA 487
Query: 513 VAEDSSGHIWLVGSYGVFQWRKDQPEAVTVELIEENIQPLCIA------ESKQGMWLIST 566
+ EDS G W+ + G+ + + T + I + L A ++K+ +W+ +
Sbjct: 488 LFEDSYGRFWVGTNGGLNSF-----NSTTGKFIRNRVNGLTDAVHYIFEDAKRCLWVATN 542
Query: 567 KGI 569
G+
Sbjct: 543 SGL 545
Score = 30.0 bits (66), Expect = 0.001
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 40/191 (20%)
Query: 479 KDGIVIGTEHGAYSLLEKQIRFDFS-----SHRYGEILQVAEDSSGHIWLVGSYGVFQWR 533
K+ + IGT +G +LL ++ F + +I + ED +G +WL +YG+ R
Sbjct: 163 KNRVWIGTTNGL-NLLSTNGKYKFKRFLDKQKQRQQIYAITEDHNGTLWLSTTYGLVNMR 221
Query: 534 -----------KDQPEAVTVELIEENIQPLCIAESKQGMWL-----------ISTKGISY 571
KD E + + I+ +I + + + + +W+ +ST+ I+
Sbjct: 222 FKDGKIHLRYFKDFSEELN-KAIDNHITTM-VEDRENNLWIGTKQTGVSKLNLSTETITS 279
Query: 572 YRNQELTKHFGAPYGLISNEFLSASCAVGEEQDNSSLIIGSQFGVVKTNTEELAVSNLPN 631
Y+ L P G+ SN L IG+ G+ N S+L N
Sbjct: 280 YQYSSLN-----PAGISSNNVRKIMM-----DQEGKLWIGTLHGINIYNPATKNFSSLHN 329
Query: 632 IQVTFSQVSVN 642
I + +S N
Sbjct: 330 IPEDPTSLSQN 340