Pairwise Alignments
Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056
Subject, 1450 a.a., two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Score = 66.2 bits (160), Expect = 2e-14
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 1011 IDEVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVSERSLQRRFKAATGKTFKESLNEV 1070
I +++++ KV + IE + T A+ L +S R+ K+ G T + + EV
Sbjct: 1340 ITPYDEQFMQKVMEFIEEQMDNAELTIDEFAEHLMLSRTIFYRKLKSIIGLTPVDFIREV 1399
Query: 1071 RLEKACQSLLSGA-KIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIE 1117
R+++A Q + SG +QVA+ GFNDP YFS+ FK G++PS++ E
Sbjct: 1400 RIKRAAQLIDSGEYNFSQVAYMTGFNDPKYFSKCFKKVVGITPSEYKE 1447
Score = 60.8 bits (146), Expect = 7e-13
Identities = 111/531 (20%), Positives = 199/531 (37%), Gaps = 76/531 (14%)
Query: 31 KSMSIFYPLPIQEQGKVIVAQNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLPQLS 90
K + I Y + + + K + L L +D G+ ++ + K ++ R S P
Sbjct: 244 KFIEIPYHVSMINEVKKFDSNTLLLATDNGLIIYKIKEKEF-----QLIDIRTSTQPSNV 298
Query: 91 SHIVYAN--SAFWAFEQHELFRTYPGGERELMLSLTPGTQIIQMGASNGMI--------- 139
VY + W F Q Y +E+ TP ++I+ N +
Sbjct: 299 VQSVYQDHYKELWIFPQTTGVIRYNPSTKEMQHLFTPADEVIRYERKNKNVIFEDRQHTL 358
Query: 140 WMVDGENFYSYEIRSGRVESLSLHELYQLNSASKVVINDAQFLVSKWALATNVGVYLSDE 199
W++ E SY R E+ L + + ++ K V + LV + L +L+
Sbjct: 359 WVLPPEGNLSYYDR----ENKELKPMLKDSNNPKSVFSP---LVRFYTLDNQGNCWLTST 411
Query: 200 QG------FAHVKNS---GKHFIQKLYFSHKRRELLVGSKRGALVI-----DIENKRPPL 245
+G F H N F + + + L V SK + + +E P
Sbjct: 412 RGIYKLSFFPHTYNLVHIDNGFETRAFLCDNEKRLWVSSKAQMIRVYQPDGQLEGYLTPQ 471
Query: 246 DRIG------SSHVLSIAETEKEYWIGT-EDGLFVY---SFITGKIVQLESNNQDGYALL 295
+I +S + + E WIGT E+G+++ S + + Q Y+L
Sbjct: 472 GKISKDKQSFTSVYCFLEDHEGNIWIGTKENGIYLLKKKSPDSYSVQQFTHQPNMPYSLS 531
Query: 296 GKKIYAMVNDFQGGMWIGTDKG---IFYYSLFGQQFTRYPAQALSN--DGSKTPIGKIAA 350
G +Y++ D +WIG G + Y+ G+ + L N G + + I+
Sbjct: 532 GNSVYSIFQDSHKRIWIGCYGGGINLLTYNKDGKTEFIHSDNELKNYPTGYASKVRHIS- 590
Query: 351 LNSDGDYLAI-TAQGLYNFNFSDELRKHLIYPGK---------------VNDFVIAQEHL 394
+ G L I T GL F+ E + + + ++ + Q+
Sbjct: 591 -EAPGGVLLIGTTNGLLTFSNQFERPEEIKFYRNCCESGISTSLSGNDVMHTYTDKQKRT 649
Query: 395 WIATEKG----LVRYNLSRRSID--TPNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSY 448
+IA+ G +V NL I+ T L +Q + D GNLW S+ I +
Sbjct: 650 YIASFTGGISQIVSKNLLSNKIEFKTYTTDDGLASDLVQAMQEDQQGNLWILSENAISKF 709
Query: 449 SLSEKNYRDYGSEWMVKAFSPSRITLLAAVKDGIVIGTEHGAYSLLEKQIR 499
K + +YG + + FS S + ++ IV GT+ G + K+++
Sbjct: 710 DAQRKTFENYGLNSLHQEFSFSEAAPVINARNQIVFGTDKGFIEISSKEMQ 760
Score = 55.5 bits (132), Expect = 3e-11
Identities = 163/895 (18%), Positives = 354/895 (39%), Gaps = 120/895 (13%)
Query: 135 SNGMIWMVD-GENFYSYEIRSGRVESLSLHELYQLNSASKVVINDAQFLVSKWALATNVG 193
++G+I++V + SY ++ + + + + Y ++ ++V D+ L+ LAT+ G
Sbjct: 220 ADGIIYLVSQSDKLASYNFKTRQFKFIEIP--YHVSMINEVKKFDSNTLL----LATDNG 273
Query: 194 --VYLSDEQGFAHV----KNSGKHFIQKLYFSHKRRELLVGSKRGALVIDIENKR----- 242
+Y E+ F + + +Q +Y H + + G + + K
Sbjct: 274 LIIYKIKEKEFQLIDIRTSTQPSNVVQSVYQDHYKELWIFPQTTGVIRYNPSTKEMQHLF 333
Query: 243 PPLDRI----GSSHVLSIAETEKEYWIGTEDGLFVYSFITGKIVQ---LESNNQDGYALL 295
P D + + + + + W+ +G Y K ++ +SNN
Sbjct: 334 TPADEVIRYERKNKNVIFEDRQHTLWVLPPEGNLSYYDRENKELKPMLKDSNNPKSVFSP 393
Query: 296 GKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDG 355
+ Y + N QG W+ + +GI+ S F + ++G +T N
Sbjct: 394 LVRFYTLDN--QGNCWLTSTRGIYKLSFFPHTYNLVHI----DNGFETRA--FLCDNEKR 445
Query: 356 DYLAITAQGLYNFNFSDELRKHLIYPGKVND--------FVIAQEH---LWIATEKGLVR 404
+++ AQ + + +L +L GK++ + ++H +WI T++ +
Sbjct: 446 LWVSSKAQMIRVYQPDGQLEGYLTPQGKISKDKQSFTSVYCFLEDHEGNIWIGTKENGI- 504
Query: 405 YNLSRRSIDT---------PNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSYSLSEKNY 455
Y L ++S D+ PN+P L ++ + DS +W + ++ Y
Sbjct: 505 YLLKKKSPDSYSVQQFTHQPNMPYSLSGNSVYSIFQDSHKRIW----IGCYGGGINLLTY 560
Query: 456 RDYGSEWMVKAFSP---------SRITLLAAVKDGIV-IGTEHGAYSLLEK-----QIRF 500
G + + + S++ ++ G++ IGT +G + + +I+F
Sbjct: 561 NKDGKTEFIHSDNELKNYPTGYASKVRHISEAPGGVLLIGTTNGLLTFSNQFERPEEIKF 620
Query: 501 DFSSHRYG--------EILQVAEDSSGHIWLVGSYGVFQW--------RKDQPEAVTVE- 543
+ G +++ D ++ G K + + T +
Sbjct: 621 YRNCCESGISTSLSGNDVMHTYTDKQKRTYIASFTGGISQIVSKNLLSNKIEFKTYTTDD 680
Query: 544 -LIEENIQPLCIAESKQG-MWLISTKGISYYRNQELTKHFGAPYGLIS-NEFLSASCAVG 600
L + +Q + E +QG +W++S IS + Q T YGL S ++ S S A
Sbjct: 681 GLASDLVQAM--QEDQQGNLWILSENAISKFDAQRKTFE---NYGLNSLHQEFSFSEAAP 735
Query: 601 EEQDNSSLIIGSQFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKLLGYRMSEPLKIAY 660
+ ++ G+ G ++ +++E+ S+ + F+ + V + ++ E L++
Sbjct: 736 VINARNQIVFGTDKGFIEISSKEMQKSSYVP-PIVFTGLKVQGQSSVIAIDDLEELRLTP 794
Query: 661 GD-SISFQFGALPSSRSQSLEYKLND---EQQWQRFDW-ALLNFDQLLPGKYRLKVRSAN 715
+++FQF AL S+ + Y E++W D ++ L GKY+L+++S N
Sbjct: 795 SQRNVTFQFAALDYVDSKEIRYAYRLKGLEEEWHDGDKNRSASYINLPNGKYKLQIKSTN 854
Query: 716 PTQRYRTEA-LFDFEVLQPWYMTSIALVGYVLSVLGLLALALWWRTRMILAANRKLKAQV 774
+ VL ++ T A + YV+ + ++ +L +L+ QV
Sbjct: 855 SDGVWMDNIRTLSINVLPTFWETGWAWLLYVILFVLFTGSIVY-----VLFYIYRLRHQV 909
Query: 775 ELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILGNVLDNIDASL---RHLSSYAKVRAWSE 831
+++ + + +H+LR L L + + VL+N D S HL+ K
Sbjct: 910 DIEQQLSNIKLRFFTDISHELRTPLTLISSPVNEVLENEDLSATAREHLTVVQK-----N 964
Query: 832 FEAPFNKVKQELAQLHFMHRGDEDESKYHDLHLLIESALKSWQ--EEYSKALIKLTYSGE 889
E + Q L ++ + + DL L+E + +++ E K +L +
Sbjct: 965 AERMLRLMNQILDFRKIQNQKMKVLVEKTDLIPLLEKVMINFRLIAEEKKINFRLASELK 1024
Query: 890 PRFVEVRQFNLDVLFNAVLTDAIKRLYKHQELTIQLEVRNAQAVIVFSDFGAPIQ 944
+ + + + +F ++++A K + +TI++ + + I D G I+
Sbjct: 1025 SIYAWIDRDKFEKIFFNLISNAFKYTPAEKAITIEVTKQTDKVTISVVDEGIGIE 1079
Score = 37.4 bits (85), Expect = 9e-06
Identities = 79/359 (22%), Positives = 138/359 (38%), Gaps = 59/359 (16%)
Query: 279 GKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFG--QQFTRYPAQAL 336
GK + L S+ + L G KIY + D +G WI T+KGI S+ G Q + +P Q +
Sbjct: 163 GKGITLYSSFKQN--LKGDKIYTVFEDSEGDEWILTNKGI---SIIGKKQVDSDFPFQYI 217
Query: 337 SN-DGSKTPIGKIAALNSDGDYLAITAQGLYNFNFSDELRKHLIYPGKVNDFVIAQEHLW 395
DG I L S D LA F F E+ H+ +V F L
Sbjct: 218 KEADG-------IIYLVSQSDKLASYNFKTRQFKFI-EIPYHVSMINEVKKF--DSNTLL 267
Query: 396 IATEKGLVRYNLSRR-----SIDTPNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSYSL 450
+AT+ GL+ Y + + I T P ++Q+ Q D LW I+ +
Sbjct: 268 LATDNGLIIYKIKEKEFQLIDIRTSTQPSNVVQSVYQ----DHYKELW------IFPQTT 317
Query: 451 SEKNYRDYGSEWMVKAFSPSRITLLAAVKD-GIVIGTEHGAYSLLEKQIRFDFSSHRYGE 509
Y E M F+P+ + K+ ++ +L + + E
Sbjct: 318 GVIRYNPSTKE-MQHLFTPADEVIRYERKNKNVIFEDRQHTLWVLPPEGNLSYYDRENKE 376
Query: 510 ILQVAEDSS------------------GHIWLVGSYGVFQWRKDQPEAVTVELIEENIQP 551
+ + +DS+ G+ WL + G+++ P + I+ +
Sbjct: 377 LKPMLKDSNNPKSVFSPLVRFYTLDNQGNCWLTSTRGIYK-LSFFPHTYNLVHIDNGFET 435
Query: 552 LC-IAESKQGMWLIS-TKGISYYRNQELTKHFGAPYGLISNE---FLSASCAVGEEQDN 605
+ ++++ +W+ S + I Y+ + + P G IS + F S C + + + N
Sbjct: 436 RAFLCDNEKRLWVSSKAQMIRVYQPDGQLEGYLTPQGKISKDKQSFTSVYCFLEDHEGN 494