Pairwise Alignments
Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056
Subject, 1381 a.a., two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Score = 68.2 bits (165), Expect = 4e-15
Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 1014 VEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVSERSLQRRFKAATGKTFKESLNEVRLE 1073
++++++ + + H DPNF + A + S+ +L ++ K+ G + VRL+
Sbjct: 1269 LDEDFIQRAIHCVNNHLEDPNFDQAQFADEMRTSKSTLYKKLKSLAGLNTSSFIRNVRLK 1328
Query: 1074 KACQSLL---SGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIE 1117
AC+ + + +++++A+ GFNDP YFS FK F + PS++IE
Sbjct: 1329 AACRIMEEKGTNVRVSELAYAVGFNDPKYFSSCFKKEFDMLPSEYIE 1375
Score = 44.7 bits (104), Expect = 5e-08
Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 19/220 (8%)
Query: 358 LAITAQGLYNFNFSDELRKHLIYPGKVNDFVIAQE-HLWIATEKGLVRYNLSRRSIDTPN 416
L T +YN F + + +V ++ +W AT GL +YN ++ N
Sbjct: 27 LLATEDVIYNLKFKQLSAPYSLPTNEVQKVYQDKDGFIWFATRNGLCQYNGYETTLYKSN 86
Query: 417 LPLPLLQT--AIQHLSLDSDGNLW-GTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRIT 473
L P L T +I L D++ +LW GTS+ ++ +K + ++ S + ++
Sbjct: 87 LYSPDLLTTNSITCLVDDNNNHLWIGTSE----GLNVMDKRTGEI-KKYKAPYLSNNVVS 141
Query: 474 LLAAVKDGIV-IGTEHGAYSLLEKQIRF-----DF--SSHRYGEILQVAEDSSGHIWL-V 524
L +D V +GT++G + ++ F DF S RY I + EDS G +W+
Sbjct: 142 ALCVTRDNTVWVGTDNGLCRYVAEKDTFVVCGDDFGDSRLRYVTIKSLLEDSDGDLWIGT 201
Query: 525 GSYGVFQWRKDQPEAVTVELIEENIQPLCIAE-SKQGMWL 563
+ G+F++ + I + I E S + +W+
Sbjct: 202 WAQGLFRYSPSTDKVEIYPKINDQYSSHVIYEDSNKDIWV 241
Score = 42.0 bits (97), Expect = 3e-07
Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 470 SRITLLAAVKDGIVIGTEHGAYSLLEKQIRFDFSSHRYGEILQVAEDSSGHIWLVGSYGV 529
S + L +K +++ TE Y+L KQ+ +S E+ +V +D G IW G+
Sbjct: 14 SFLILFLLLKSALLLATEDVIYNLKFKQLSAPYSLPT-NEVQKVYQDKDGFIWFATRNGL 72
Query: 530 FQWRKDQ-----PEAVTVELIEENIQPLCIAESKQGMWLISTKGISYY--RNQELTKHFG 582
Q+ + + +L+ N + ++ +W+ +++G++ R E+ K +
Sbjct: 73 CQYNGYETTLYKSNLYSPDLLTTNSITCLVDDNNNHLWIGTSEGLNVMDKRTGEI-KKYK 131
Query: 583 APYGLISNEFLSASCAVGEEQDNSSLIIGSQFGVVKTNTEE 623
APY +SN +SA C +DN ++ +G+ G+ + E+
Sbjct: 132 APY--LSNNVVSALCVT---RDN-TVWVGTDNGLCRYVAEK 166
Score = 40.4 bits (93), Expect = 1e-06
Identities = 139/693 (20%), Positives = 263/693 (37%), Gaps = 151/693 (21%)
Query: 262 EYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYY 321
E W G +G +Y + G+ V+ + G+ L + A+ D++G W+GT GI
Sbjct: 434 EIWFGMYNG-GIYVYRKGEKVKHLTTKNSGF-LTSDCVSALYEDYEGNCWVGTRGGI--- 488
Query: 322 SLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQGLYNFNFSDELRKHLIYP 381
G + DG+ DY T NF+D L IY
Sbjct: 489 ---GVRLA---------DGT--------------DYRFET------MNFNDSLSAGWIY- 515
Query: 382 GKVNDFVIAQEH-LWIATEK-GLVRYNLSRRSIDTPNLP------LPLLQTAIQHLSLDS 433
V D + + +W+AT G++ R T L+ A+ + LD
Sbjct: 516 --VRDIIKDMDSSVWLATSNLGVIHITGDVRQPSTLKYENYSFHNRKLITNAVLCIHLDR 573
Query: 434 DGNLW-GTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLLAAVKDGIVIGTEHGAYS 492
G LW GT ++ Y+ ++ + + +A+S + +++ E
Sbjct: 574 FGRLWAGTEGGGLYLYNRNKGEFEE-----KTRAYS---------IPGDVIVSIE----- 614
Query: 493 LLEKQIRFDFSSHRYGEILQVAEDSSGHIWLVGSYGVFQWRKDQPEAVTVELIEENIQPL 552
ED SG++WL G+ + V + + +
Sbjct: 615 ----------------------EDKSGNLWLGTISGLVKL------YVAAVGNDFSTRIY 646
Query: 553 CIAESKQGMWLISTKGISYYRNQELTKHFGAPYGLISNEFLSASCAVGEEQDNSSLIIGS 612
A+ Q +++++ S RN EL FG G N F + ++ N
Sbjct: 647 TSADGLQDNFIVNS---SCSRNGEL--FFGGHKGY--NSFFPDKMEIPSQETN------- 692
Query: 613 QFGVVKTNTEELAVSNLP-NIQVTFSQVSVNHTTKLLGYRMSEPLKIAYGDSISFQFGAL 671
F + + SNLP +Q S V +T+K+ P K ++ S +F AL
Sbjct: 693 -FLITDIKIFNHSFSNLPVELQQKISPVMPTYTSKI-----ELPHKY---NNFSIEFAAL 743
Query: 672 PSSRSQSLEYKL---NDEQQWQ--RFDWALLNFDQLLPGKYRLKVRSANPTQRYRTEAL- 725
+ Y N ++ WQ D ++ L G Y ++++ N +
Sbjct: 744 TYKNPELNRYAYRLQNFDRDWQYTDADRRFAYYNNLPSGTYTFQLKATNENGEWSGYVRE 803
Query: 726 FDFEVLQPWYMTSIALVGYVL--SVLGLLALALWWRTRMILAANRKLKAQVELKTSQLRH 783
VL P++ T A + YV+ SV+G +++ + R++L +L+ + K +L H
Sbjct: 804 LTVVVLPPFWATWWAYLLYVIIVSVIG-VSIYRTAKNRILLRNALRLREIEKAKAEELNH 862
Query: 784 QSKIVLSN-NHQLRKQLQLHHTILGNVLDNIDASLRHLSSYAKVRAWSEFEAPFNKVKQE 842
+N H+L L TI+ +D + + ++ + ++ +
Sbjct: 863 AKLQFFTNITHELLTPL----TIISATVDELKTQAPSHND-----LYTVMNSNIQRLIRL 913
Query: 843 LAQLHFMHRGDEDESKYH----DLHLLIESALKSWQEEYSKALIKLTYSGEPRFVEVRQF 898
L Q+ + + K D+ +++A +S+Q K I ++ +P + + F
Sbjct: 914 LQQILEFRKAETGNLKLRVSPGDIAAFVKNAAESFQPLVKKRKIHFSFLCDPESM-IGYF 972
Query: 899 NLD----VLFNAVLTDAIKRLYKHQELTIQLEV 927
++D +L+N +L++A K Y ++ IQ+ +
Sbjct: 973 DMDKLDKILYN-LLSNAAK--YNKEDGFIQVSL 1002
Score = 38.1 bits (87), Expect = 5e-06
Identities = 66/317 (20%), Positives = 113/317 (35%), Gaps = 71/317 (22%)
Query: 247 RIGSSHVLSIAETEKEY-------WIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKI 299
++ + + L E +K Y W T +GL Y+ + + SN L I
Sbjct: 41 QLSAPYSLPTNEVQKVYQDKDGFIWFATRNGLCQYNGYETTLYK--SNLYSPDLLTTNSI 98
Query: 300 YAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLA 359
+V+D +WIGT +G+ + +Y A LSN+ ++AL
Sbjct: 99 TCLVDDNNNHLWIGTSEGLNVMDKRTGEIKKYKAPYLSNN-------VVSAL-------- 143
Query: 360 ITAQGLYNFNFSDELRKHLIYPGKVNDFVIAQEHLWIATEKGLVRYNLSRRSIDTPNLPL 419
V +W+ T+ GL RY + +
Sbjct: 144 ---------------------------CVTRDNTVWVGTDNGLCRYVAEKDTFVVCGDDF 176
Query: 420 ---PLLQTAIQHLSLDSDGNLW-GTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLL 475
L I+ L DSDG+LW GT ++ YS S Y + S +
Sbjct: 177 GDSRLRYVTIKSLLEDSDGDLWIGTWAQGLFRYSPSTDKVEIYPK---INDQYSSHVIYE 233
Query: 476 AAVKDGIVIGTEHGAYSLLE----KQIRFDFSSHRYGE--------ILQVAEDSSGH-IW 522
+ KD V +G + L +++ + H G+ + +AED + H +W
Sbjct: 234 DSNKDIWVGSWGYGLFKLQNPKDMQRVSYQRFLHENGDDSSLSDNIVYDIAEDINTHTLW 293
Query: 523 LVGSYGVFQWRKDQPEA 539
+ G+ + D+P+A
Sbjct: 294 VGTRSGLSILKLDEPDA 310