Pairwise Alignments
Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056
Subject, 1310 a.a., two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Score = 82.0 bits (201), Expect = 3e-19
Identities = 162/778 (20%), Positives = 304/778 (39%), Gaps = 152/778 (19%)
Query: 253 VLSIAETEKEYWIGTEDG-LFVYSFITGKIVQLES-NNQDGYALLGKKIYAMVNDFQGG- 309
VLS+AE E++ WIGT+ G + + TG+I QLE ++ Y+L I + ND+
Sbjct: 257 VLSLAEREEQLWIGTDGGGINILHPETGEISQLEYIPGRENYSLPANSILCLHNDYNNNV 316
Query: 310 ----------------------------------------------MWIGTDKG-IFYYS 322
+WIGTD G I +S
Sbjct: 317 WAGSTCNGLISIREVSMKTYTDVVPGNDRGLSNGTVRSLYRQSPDSIWIGTDGGGINLFS 376
Query: 323 LFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQGLYNFNFSDELRKHLIYPG 382
++FT Y S G K + I+ +++ ++G++ FN + G
Sbjct: 377 PHTEKFTHYS----STWGDK--VAFISGFTPGKLLISLFSKGVFVFNPAT---------G 421
Query: 383 KVNDFVIAQEHLWIATEKGLVRYNLSRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWGTSD 442
+ F I + NL + +TPN L L D
Sbjct: 422 EKQPFTIIDKETTTRLCNRGKSVNLYQ---NTPNTVLFL-------------------GD 459
Query: 443 YQIWSYSLSEKNYRDYGSE-------WMVKAFSPSRITLLAAVKDGIVIGTEHGAYSLLE 495
+ I+ Y L EK + E +V +T + +K Y L +
Sbjct: 460 H-IYQYHLKEKKFSTITEEEGKDIVGTLVPFDHQENLTYINDIKH---------IYELDD 509
Query: 496 KQIRFD--FSSHRYGEILQVAEDSSGHIWLVGSYGVFQWRKDQPEAVTVELIEENIQP-- 551
+ R F + I V+ D GH W+ ++G+ + P + L+ N+
Sbjct: 510 QTSRLKTVFECYTDTVISSVSHDEQGHFWIGSNFGLIHY---DPVLKSRTLVPTNLFTEI 566
Query: 552 -LCIAESKQGMWL-ISTKGISYYRNQELTKHFGAPYGLISNEFLSASCAVGEEQDNSSLI 609
+ + + K +W+ + +Y+ ++ FG G I NE+L + V E+ D
Sbjct: 567 NMVLCDQKGKVWIGVDNMLFAYFIKEQKFVLFGESNGAIQNEYLPNARLVNEQGD---AY 623
Query: 610 IGSQFGVVKTNTEELA-VSNLPNIQ---VTFSQVSVNHTTKLLGYRMSEPLKIAYGDSIS 665
IG G+++ + + L S +P +Q +T + S NH Y + + + +IS
Sbjct: 624 IGGVKGMLRIDGQLLLNTSEMPELQLLDITINGESANHE----WYNHPAKISVPWNSNIS 679
Query: 666 FQFGALPSS--RSQSLEYKLN--DEQQWQRFDWALLNFDQLLPGKYRLKVR-SANPTQRY 720
+ + R + Y++ + + + ++ L+ LLPG YR+ +A
Sbjct: 680 IRIMSREEDIFRQKIYRYQIEGLNNEYTESYNPELV-IRSLLPGSYRIMASCTAKDGSWI 738
Query: 721 RTEALFDFEVLQPWYMTSIALVGYVLSVLGLLALALWWRTRMILAAN-RKLK-AQVELKT 778
+ + + VL PWY T + L+ L+++A+ R + N KLK A E +
Sbjct: 739 PDQQVLELTVLPPWYRT----WWFSLTCAVLVSIAIIETFRRTVKRNEEKLKWAMKEHEK 794
Query: 779 SQLRHQSKIVLSNNHQLRKQLQLHHTILGNVLDNIDASLRHLSSYAKVRAWSEFEAPFNK 838
+ + +++ +H+LR L L H L +L ++ + Y ++A +
Sbjct: 795 QTYEEKVRFLINISHELRTPLTLIHAPLNRILKSLSS---EDPQYLPLKA---IYRQAQR 848
Query: 839 VKQELAQLHFMHRGDEDESKY----HDLHLLIESALKSWQEEYSKALIKLTYSGEPRFVE 894
+K + + + + + ESK H L+ IE + + E +++ Y +P+ +E
Sbjct: 849 MKNLINMVLDVRKMEVGESKLLIQPHPLNHWIEHVSQDFISEGEAKNVRIRYQLDPQ-IE 907
Query: 895 VRQFNLD---VLFNAVLTDAIKRLYKHQELTIQLEV--RNAQAVIVFSDFGAPIQNID 947
F+ D ++ + +L +A+K + E+TI E+ + I D G ++ +D
Sbjct: 908 TVSFDKDKCEIILSNLLINALKHSPQDTEITIASELLPETGRVRISIIDQGCGLKQVD 965
Score = 60.1 bits (144), Expect = 1e-12
Identities = 34/107 (31%), Positives = 62/107 (57%), Gaps = 3/107 (2%)
Query: 1013 EVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVSERSLQRRFKAATGKTFKESLNEVRL 1072
+V++ +L KV K I+ + S+ N + + +S SL + KA TG + +N+ R+
Sbjct: 1200 QVDESFLLKVNKTIQENLSNTNLDIQFICKEIGLSRTSLYTKLKALTGIGANDYINKFRI 1259
Query: 1073 EKACQSLLSGAKIA--QVAFDCGFNDPSYFSQRFKHHFGLSPSQFIE 1117
EKA +L++ ++ +++ + GF PSYFS FK + G +P+Q+ E
Sbjct: 1260 EKAL-TLIANTEMTFTEISEEVGFTSPSYFSTAFKQYTGETPTQYKE 1305
Score = 39.7 bits (91), Expect = 2e-06
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 251 SHVLSIAETEKEY-WIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGG 309
S+V I E+ + WIGT+ GL + K + ++N D ++LL IY + D Q
Sbjct: 41 SNVRCILRDEQGFIWIGTKAGLGKFDGHQLKRYKHQAN--DPHSLLHNLIYQIAEDKQHN 98
Query: 310 MWIGTDKGIFYYSLFGQQFT 329
+WI T+KGI Y FT
Sbjct: 99 IWILTEKGIARYQQQSNNFT 118
Score = 37.7 bits (86), Expect = 6e-06
Identities = 42/162 (25%), Positives = 59/162 (36%), Gaps = 41/162 (25%)
Query: 295 LGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSD 354
L + ++ D QG +WIGT G+ + G Q RY QA
Sbjct: 39 LPSNVRCILRDEQGFIWIGTKAGLGKFD--GHQLKRYKHQA------------------- 77
Query: 355 GDYLAITAQGLYNFNFSDELRKHLIYPGKVNDFVIAQEHLWIATEKGLVRYNLSRRSIDT 414
N L +LIY + Q ++WI TEKG+ RY +
Sbjct: 78 --------------NDPHSLLHNLIYQIAEDK----QHNIWILTEKGIARYQQQSNNFTF 119
Query: 415 PNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSYSLSEKNYR 456
P TA L DG L+G D +I+ YS + + R
Sbjct: 120 PTDEEGNYITAYS-FCLVPDGILFGGKD-RIYKYSYKDSSLR 159
Score = 34.7 bits (78), Expect = 5e-05
Identities = 48/222 (21%), Positives = 88/222 (39%), Gaps = 31/222 (13%)
Query: 188 LATNVGVYLSDEQGFAHV-KNSGKHFIQKLY-FSHKRRELLVGSKRGALVIDIENKR--P 243
L ++ Y E+ F+ + + GK + L F H+ + + +D + R
Sbjct: 457 LGDHIYQYHLKEKKFSTITEEEGKDIVGTLVPFDHQENLTYINDIKHIYELDDQTSRLKT 516
Query: 244 PLDRIGSSHVLSIAETEK-EYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAM 302
+ + + S++ E+ +WIG+ GL Y + + +N L +I +
Sbjct: 517 VFECYTDTVISSVSHDEQGHFWIGSNFGLIHYDPVLKSRTLVPTN-------LFTEINMV 569
Query: 303 VNDFQGGMWIGTDKGIFYYSLFGQQFTRY------------PAQALSNDGSKTPIGKI-A 349
+ D +G +WIG D +F Y + Q+F + P L N+ IG +
Sbjct: 570 LCDQKGKVWIGVDNMLFAYFIKEQKFVLFGESNGAIQNEYLPNARLVNEQGDAYIGGVKG 629
Query: 350 ALNSDGDYLAITAQ----GLYNFNFSDELRKHLIY--PGKVN 385
L DG L T++ L + + E H Y P K++
Sbjct: 630 MLRIDGQLLLNTSEMPELQLLDITINGESANHEWYNHPAKIS 671
Score = 28.5 bits (62), Expect = 0.004
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 17/74 (22%)
Query: 513 VAEDSSGHIWLVGSYGV----------FQWRKDQPEAVTVELIEENIQPLCIAESKQ-GM 561
+ D G IW+ G+ ++ + + P ++ LI + IAE KQ +
Sbjct: 46 ILRDEQGFIWIGTKAGLGKFDGHQLKRYKHQANDPHSLLHNLIYQ------IAEDKQHNI 99
Query: 562 WLISTKGISYYRNQ 575
W+++ KGI+ Y+ Q
Sbjct: 100 WILTEKGIARYQQQ 113