Pairwise Alignments

Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 1337 a.a., two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 75.5 bits (184), Expect = 3e-17
 Identities = 114/596 (19%), Positives = 241/596 (40%), Gaps = 68/596 (11%)

Query: 255 SIAETEKEYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGT 314
           ++A  + + W+GT +GL+V      ++V L+ +    ++L  K IY+M  D +GG+WIGT
Sbjct: 268 TVAYMKGKIWLGTFNGLYVIDEKKNEVVSLKEDLMRSFSLSDKMIYSMCQDSEGGIWIGT 327

Query: 315 -DKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQGLYNFNFSDE 373
              G+ Y      QF ++   +  N  +   I ++A       ++     G+   N  + 
Sbjct: 328 LFGGVNYLPNRNLQFDKFVPGSSGNSLNTKRIRELAEDVKGNIWIGTEDAGISVLNVENG 387

Query: 374 LRKHLIYPGKVNDFVIAQEHLWIATEKGLVRYNLSRRSIDTPNLP-----------LPLL 422
           + + +      N  V     L +   +  +   L +  +D   +P           L + 
Sbjct: 388 VIRQVKDHKSGNHLVT----LAVVPFQDQIYCGLFKAGLDVIQVPGYTVRHYTPSELKIG 443

Query: 423 QTAIQHLSLDSDGNLW---GTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLLAAVK 479
           + ++    +D  G  W   G   Y   + S +  N ++ G  W+           L   K
Sbjct: 444 EGSVYVFHIDRKGRKWLGTGWGLYVAEAGSFNFVNVKETGYNWIFD---------LCEGK 494

Query: 480 DGIV----IGTEHGAYS-LLEKQIRFDFSSHR-----YGEILQVAEDSSGHIWL-VGSYG 528
           DG V    +G+    YS   +   +++   +         +  V +DS G +W      G
Sbjct: 495 DGSVWIATMGSGVWRYSPQTDSYKKYESKENEPDGLSSNSVSSVMQDSKGRVWFSTDRGG 554

Query: 529 VFQWRKDQPEAVTVELIE---ENIQPLCIAESKQGMWLISTKG-ISYYRNQELTKHFGAP 584
           +  + +++   VT  + E   +++    + + +  +W  + +G + ++ ++   + F   
Sbjct: 555 ICYYNEEKDNFVTYSIKEGLPDDVAYKILEDEEGNLWFGTNRGLVRFHPDKNDIRVFTTK 614

Query: 585 YGLISNEFLSASCAVGEEQDNSSLIIGSQFGVVKTNTEELAVSN-LPNIQVTFSQVSVNH 643
            GL+ N+F   S     +  N     G   G+V  +  E    + +P I +  S+ S+ +
Sbjct: 615 DGLLGNQFNYKSAL---KARNGKFYFGGIDGLVAFDPREAKTDDFVPPIYI--SKFSI-Y 668

Query: 644 TTKLLGYRMSEPLK----------IAYGDS-ISFQFGALPSSRSQSLEYKLN----DEQQ 688
             ++  +    PLK          + Y +S ISF    L  S +++ +Y       D+  
Sbjct: 669 NKEVTVHTADSPLKECITHTDRIVLNYDESNISFDVALLSYSTAEANQYYYRMAPIDKDW 728

Query: 689 WQRFDWALLNFDQLLPGKYRLKVR-SANPTQRYRTEALFDFEVLQPWYMTSIALVGYVLS 747
            +      +++ +L PG+Y  +V+ ++N       E     E+L PW+ +  A V Y + 
Sbjct: 729 IKAATNQNISYAKLPPGQYTFQVKATSNDNGGQFVERSLSIEILPPWWFSPWAYVFYFIW 788

Query: 748 VLGLLALALWWRTRMILAANRKLKAQVELKTSQLRHQSKIVLSNN--HQLRKQLQL 801
           ++ ++    +W          + +   E++  +  ++SK+       H++R  L L
Sbjct: 789 LVCVVVSWFFWYKHRKEKEMEERQKLFEIEKEKELYESKVNFFTEIAHEVRTPLTL 844



 Score = 62.8 bits (151), Expect = 2e-13
 Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 1/109 (0%)

Query: 1008 KVGIDEVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVSERSLQRRFKAATGKTFKESL 1067
            K+ +++V++E+++KV + IE +  D N      A+ L +S  SL R+ K  +  +  + +
Sbjct: 1214 KMQMNKVDEEFMNKVIRTIEENIIDTNLNVEHLAEILGMSRSSLLRKIKMLSNLSPVDFI 1273

Query: 1068 NEVRLEKACQSLLSGA-KIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQF 1115
              +RL KA + +  G   I  + F  G N PSYFS+ F   FG++P  F
Sbjct: 1274 RLIRLRKAAELIHEGKYLIGDICFMVGINSPSYFSKLFLKQFGMTPKDF 1322



 Score = 45.8 bits (107), Expect = 2e-08
 Identities = 64/301 (21%), Positives = 120/301 (39%), Gaps = 28/301 (9%)

Query: 248 IGSSHVLSIAETEKEY-WIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKK-IYAMVND 305
           + SS+V +I +    + W GT++GL  +    G  + L  N +D     G   I A+  D
Sbjct: 38  LSSSNVKAIIQDSYGFMWFGTKNGLNRFD---GTSI-LRMNCEDHQLKKGNNNISALYED 93

Query: 306 FQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQGL 365
               +W+GTD+G++ Y      FT    +          +  I        ++ I  QG+
Sbjct: 94  ANRTLWVGTDRGVYLYHPASDVFTHINQKTKEGKTMDNWVSAIVGDTQGNIWVIIPDQGI 153

Query: 366 YNFNFSD----ELRKHLIYPGKVNDFVIAQEH--LWIA-TEKGLVRYNLSRRSID---TP 415
           + +  ++    E+     +  +  + +  +E+  +WI     G+ RYN    S +     
Sbjct: 154 FRYKDNELYFYEISNRRQFKQESPNCICVRENGEVWIGFWGLGICRYNPQNDSFEQIVED 213

Query: 416 NLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLL 475
               PL+   I  +    D  +   ++ ++  Y+       D      V     +  T +
Sbjct: 214 RDGRPLVGKNINSICEYGDWLIMAANEGELIKYNTKSHVLEDI----KVAGADNTFYTTV 269

Query: 476 AAVKDGIVIGTEHGAYSLLEKQ-----IRFDFS---SHRYGEILQVAEDSSGHIWLVGSY 527
           A +K  I +GT +G Y + EK+     ++ D     S     I  + +DS G IW+   +
Sbjct: 270 AYMKGKIWLGTFNGLYVIDEKKNEVVSLKEDLMRSFSLSDKMIYSMCQDSEGGIWIGTLF 329

Query: 528 G 528
           G
Sbjct: 330 G 330



 Score = 37.7 bits (86), Expect = 6e-06
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 16/172 (9%)

Query: 249 GSSHVLSIAETEKEYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQG 308
           GS +V  I    ++ W+GT  GL+V    +   V ++   + GY      I+ +     G
Sbjct: 445 GSVYVFHIDRKGRK-WLGTGWGLYVAEAGSFNFVNVK---ETGY----NWIFDLCEGKDG 496

Query: 309 GMWIGT-DKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQG--L 365
            +WI T   G++ YS     + +Y ++    DG  +        +S G     T +G   
Sbjct: 497 SVWIATMGSGVWRYSPQTDSYKKYESKENEPDGLSSNSVSSVMQDSKGRVWFSTDRGGIC 556

Query: 366 YNFNFSDELRKHLIYPGKVNDFVIA-----QEHLWIATEKGLVRYNLSRRSI 412
           Y     D    + I  G  +D         + +LW  T +GLVR++  +  I
Sbjct: 557 YYNEEKDNFVTYSIKEGLPDDVAYKILEDEEGNLWFGTNRGLVRFHPDKNDI 608