Pairwise Alignments
Query, 1121 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056
Subject, 1370 a.a., two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Score = 79.7 bits (195), Expect = 1e-18
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 6/124 (4%)
Query: 998 HKPEEGEQAAKVGIDEVE-----KEWLSKVEKLIELHYSDPNFTTSTAAQALYVSERSLQ 1052
+K EE +V ID +E KE+L KV +I + S+ +F A AL VS+ SL
Sbjct: 1243 NKQEEFRSNVEVNIDSLEPSSIDKEFLDKVISVINSNMSEGDFDVVQLADALAVSKSSLY 1302
Query: 1053 RRFKAATGKTFKESLNEVRLEKACQSLL-SGAKIAQVAFDCGFNDPSYFSQRFKHHFGLS 1111
R+ K ATG + E + +RL+ Q L +A+VA++CGF++P YF+ FK FG++
Sbjct: 1303 RKMKLATGLSPIEFIRNIRLKHGSQLLKDKSISVAEVAYECGFSNPKYFATCFKEEFGVT 1362
Query: 1112 PSQF 1115
P ++
Sbjct: 1363 PKEY 1366
Score = 43.1 bits (100), Expect = 1e-07
Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 80/257 (31%)
Query: 246 DRIGSSHVLSIAETEKEY-WIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVN 304
D + ++ + IAE + Y +IGT+ G+ + T +I+ + N+ L ++I M+
Sbjct: 101 DLLTNNEITCIAENKNGYLFIGTKKGINILDKRTYQIIPVTHND-----LKDQEIRTMIV 155
Query: 305 DFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGD---YLAIT 361
D G +W+GT +F S RY S P+ + ++ D D ++ +
Sbjct: 156 DSDGWVWVGTLTSVFRCSADFSYCKRY--------DSTLPVTSVNSIYEDADKNIWVTLW 207
Query: 362 AQGLYNFN---------------------FSDELRKH----------LIYPGKVND---- 386
+GL+ +N F D ++H L+YP + +D
Sbjct: 208 ERGLHRYNSKTDSFIAMPQIGDLNNPFKVFQDNKKQHWILTWESGIFLLYPEEKDDLMYS 267
Query: 387 ---------------FVIAQE----HLWIATEKGLVRYNLSRR------SIDTPNLPLPL 421
F I Q+ ++WI + +GL Y L +R ++D ++
Sbjct: 268 HVDIKSNEHWDKNGCFSITQDDKYGYIWIVSTQGL--YALQKRPGNIINTVDISHIS-SK 324
Query: 422 LQTAIQHLSLDSDGNLW 438
L + D GNLW
Sbjct: 325 LNNIFSEIVKDKSGNLW 341
Score = 42.4 bits (98), Expect = 3e-07
Identities = 95/497 (19%), Positives = 177/497 (35%), Gaps = 102/497 (20%)
Query: 47 VIVAQNLYLGSDGGIWV----HDVHGKVMYFDGQNVLPRRGSVLPQLSSHIVYANSAFWA 102
V ++Y +D IWV +H D +P+ G + N+ F
Sbjct: 188 VTSVNSIYEDADKNIWVTLWERGLHRYNSKTDSFIAMPQIGDL-----------NNPFKV 236
Query: 103 FEQHE-----------LFRTYPGGERELMLSLTP----------GTQIIQMGASNGMIWM 141
F+ ++ +F YP + +LM S G I G IW+
Sbjct: 237 FQDNKKQHWILTWESGIFLLYPEEKDDLMYSHVDIKSNEHWDKNGCFSITQDDKYGYIWI 296
Query: 142 VDGENFYSYEIRSGRVESLS--LHELYQLNSASKVVINDAQFLVSKWALATNVGVYLSD- 198
V + Y+ + R G + + H +LN+ ++ D + W A N GV + D
Sbjct: 297 VSTQGLYALQKRPGNIINTVDISHISSKLNNIFSEIVKDKSG--NLWIAAFNEGVSMIDL 354
Query: 199 ------EQGFAHVKNSGKHFIQ-KLYFSHKRRELLVGSKRGALVIDIENKR--------P 243
F ++ K + K +L + R + I + P
Sbjct: 355 NKPLVQNYSFPVIREKTGFVTNIKNIYEDKEGDLWIDQNRWGIGIYNPDSNKLLFYTDIP 414
Query: 244 PLDRIGSSHVLSIAETE---KEYWIGTEDGLFVYSF--------ITGKIVQLESNNQDGY 292
L I + +S + E W+G+E +Y + G + + + G+
Sbjct: 415 SLKNIANLKNVSCITSVPLLNEIWLGSEYYPEIYKVKKDKKGVELLGTLKLTDYVDNSGF 474
Query: 293 ALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALN 352
L D +W+GT KGI PA+ +K P I +
Sbjct: 475 PRL------FYTDSNHNLWVGTTKGILV----------KPAKEKILQDTKFPFVDIIGIR 518
Query: 353 SDGD---YLAITAQGLYNFNFSDEL---RKHL-----IYPGKVNDFVIA-----QEHLWI 396
D +++ QG+YN S +L K+L G ++D + A +W+
Sbjct: 519 EGKDGSLWISTRKQGVYNAKISSDLTLEEKNLRNLKTHAEGVISDNIGAICVDDNGLVWM 578
Query: 397 ATEKG-LVRYNLSRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSYSLSEKNY 455
++ G + Y+ ++ + +L+ I ++ D G++W +++ ++ Y
Sbjct: 579 GSQDGDVFTYDPQTNKVENLSDMFDMLEEGIFNIITDQLGHIWISTNKRVIEYDPKNGGI 638
Query: 456 RDYG--SEWMVKAFSPS 470
DY ++ MV +F P+
Sbjct: 639 MDYSTMTDVMVNSFMPN 655
Score = 38.9 bits (89), Expect = 3e-06
Identities = 77/401 (19%), Positives = 159/401 (39%), Gaps = 60/401 (14%)
Query: 250 SSHVLSI-AETEKEYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQG 308
SS VL + + E W+GT+DGL Y +++ S + L +I + + G
Sbjct: 60 SSTVLRVHCDREGFLWLGTKDGLCRYDGY--RLLVFRSGLKSPDLLTNNEITCIAENKNG 117
Query: 309 GMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLAITAQGLY-- 366
++IGT KGI Q L + +T I ++SDG T ++
Sbjct: 118 YLFIGTKKGINILDKRTYQIIPVTHNDLKDQEIRTMI-----VDSDGWVWVGTLTSVFRC 172
Query: 367 --NFNFSDELRKHLIYPGKVNDFVIAQEHLWIAT-EKGLVRYNLSRRSIDTPNLPLPLLQ 423
+F++ L + + A +++W+ E+GL RYN S + +P
Sbjct: 173 SADFSYCKRYDSTLPVTSVNSIYEDADKNIWVTLWERGLHRYNSKTDSF----IAMP--- 225
Query: 424 TAIQHLSLDSDGNLWGTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLLAAVKDGIV 483
QI + K ++D + + + L KD ++
Sbjct: 226 --------------------QIGDLNNPFKVFQDNKKQHWILTWESGIFLLYPEEKDDLM 265
Query: 484 IGTEHGAYSLLEKQIRFDFSSHRYGEILQVAEDSSGHIWLVGSYGVFQWRKDQPEAV-TV 542
YS ++ + + + I Q +D G+IW+V + G++ +K + TV
Sbjct: 266 -------YSHVDIKSNEHWDKNGCFSITQ--DDKYGYIWIVSTQGLYALQKRPGNIINTV 316
Query: 543 ELIE-----ENIQPLCIAESKQGMWLIS-TKGISYY-RNQELTKHFGAPYGLISNEFLSA 595
++ NI + + +W+ + +G+S N+ L +++ P F++
Sbjct: 317 DISHISSKLNNIFSEIVKDKSGNLWIAAFNEGVSMIDLNKPLVQNYSFPVIREKTGFVTN 376
Query: 596 SCAVGEEQDNSSLIIGSQFGVVKTNTEE---LAVSNLPNIQ 633
+ E+++ I +++G+ N + L +++P+++
Sbjct: 377 IKNIYEDKEGDLWIDQNRWGIGIYNPDSNKLLFYTDIPSLK 417
Score = 30.0 bits (66), Expect = 0.001
Identities = 96/490 (19%), Positives = 182/490 (37%), Gaps = 95/490 (19%)
Query: 390 AQEHLWIATEKGLVRYNLSRRSIDTPNLPLPLLQTAIQHLSLDSDGNLW------GTSDY 443
+ +LW+ T KG++ + + P I + DG+LW G +
Sbjct: 482 SNHNLWVGTTKGILVKPAKEKILQDTKFPF----VDIIGIREGKDGSLWISTRKQGVYNA 537
Query: 444 QIWS-YSLSEKNYRDYGSEWMVKAFSPSRITLLAAVKDGIV-IGTEHGAYSLLEKQIR-- 499
+I S +L EKN R+ + + I + +G+V +G++ G + Q
Sbjct: 538 KISSDLTLEEKNLRNLKTH--AEGVISDNIGAICVDDNGLVWMGSQDGDVFTYDPQTNKV 595
Query: 500 ---FDFSSHRYGEILQVAEDSSGHIWLVGSYGVFQWRKD----QPEAVTVELIEENIQPL 552
D I + D GHIW+ + V ++ + +++ + P
Sbjct: 596 ENLSDMFDMLEEGIFNIITDQLGHIWISTNKRVIEYDPKNGGIMDYSTMTDVMVNSFMPN 655
Query: 553 CIAESKQGMWLI-STKGISYYRNQELTKHFGAPYGLISNEFLSASCAVGE---------- 601
+++ G L KGIS + PY +S+ V +
Sbjct: 656 SYYKTRSGKILYGGNKGISVF----------TPYDHLSDNPRRIRTMVSDVKIDGVSSLL 705
Query: 602 EQDNSSLIIGSQFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKLLGYRMSEPLKIAYG 661
E++N + SQ ++ N + NI++ FS L Y + +K AY
Sbjct: 706 EKNNQRFNLRSQ--IISLNAGD------KNIEIDFSS---------LNYAFPDKIKYAYK 748
Query: 662 DSISFQFGALPSSRSQSLEYKLNDEQQWQRFDWALLNFDQLLPGK--YRLKVRSANPTQR 719
++D+ + R D ++QL GK + LK N
Sbjct: 749 MD------------------GVDDDWVYVRGDRQFAFYNQLPKGKRTFYLKTTDVNGLWS 790
Query: 720 YRTEALFDFEVLQP-WYMTSIALVGYVLSVLGLLALALWWRTRMILAANRKLKAQVELKT 778
+ F+ QP +Y T A + Y++ L L L R I + AQ++ +
Sbjct: 791 NYIAEVQVFK--QPAFYETLWAYLFYIVFTLLCLYLFYHRMKRRIQLRHELRIAQIDKEK 848
Query: 779 SQLRHQSKIVLSNN--HQLRKQLQLHHTILGNVLDNIDASLRHLSSYAKVRAWSEFEAPF 836
S+ Q+K+ N H L L TI+ ++D+ + +++ +++ + +
Sbjct: 849 SEELVQTKLRYFTNISHDLLTPL----TIITCLIDDAE-----MTNGSRISQLTMIRSNV 899
Query: 837 NKVKQELAQL 846
NK+++ L Q+
Sbjct: 900 NKLRRLLQQI 909