Pairwise Alignments

Query, 599 a.a., arginine--tRNA ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 581 a.a., arginyl-tRNA synthetase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  612 bits (1579), Expect = e-179
 Identities = 312/579 (53%), Positives = 405/579 (69%), Gaps = 4/579 (0%)

Query: 24  NIQALINDRVSQAIEAAGAPAGTPALVR--QSAKAQFGDYQANGIMGAAKQLGTNPREFA 81
           +IQ+L+   +    +    PA   A ++  ++     GD   N  M   K  G NPRE A
Sbjct: 4   HIQSLLEQTIESFKQQGILPADFEARIQVDRTKDKSHGDLATNVAMMLTKAAGKNPRELA 63

Query: 82  QKVLDVLNLEGIASKTEIAGPGFINIFLSEEFLAAQAEAALADARLGVAQEAPKTIVADY 141
           Q ++D L      +K EIAGPGFIN F+ +  LA Q +AA+ D  LG+   AP+T+V DY
Sbjct: 64  QLIIDNLPASAYVAKVEIAGPGFINFFIDDSALANQLQAAIGDEHLGIKLPAPQTVVVDY 123

Query: 142 SAPNVAKEMHVGHLRSTIIGDAVVRTLEFLGHKVIRANHIGDWGTQFGMLIANLERVQKA 201
           S+PN+AKEMHVGHLRSTIIGD+VVRTLEFLGHKVIR NH+GDWGTQFGML+A +E ++ A
Sbjct: 124 SSPNLAKEMHVGHLRSTIIGDSVVRTLEFLGHKVIRQNHVGDWGTQFGMLLAYMEELRAA 183

Query: 202 SGE-VSMELSDLEAFYRESKKLYDEDEQFAETARNYVVKLQGGDPFCLEMWKKLVDVTMI 260
           +GE   +ELSDLE FYR +K  +DE  +FA  AR  VV LQ GD +C ++W++  D+++ 
Sbjct: 184 NGEQAQLELSDLETFYRAAKLRFDESAEFATRARQLVVALQSGDEYCNKLWREFNDISLS 243

Query: 261 QNQRNYDRLNVSLTRENVMGESMYNDMLPQIVSDLKAKGLAVEDDGAQVVFLEEFKNKDG 320
                Y+RL VSLTR +V GES YN  L Q+V+DL AKGL  E +GA+VVF EEF+ K+G
Sbjct: 244 HCHEVYERLGVSLTRADVHGESAYNADLEQVVNDLAAKGLLTESNGAKVVFQEEFRTKEG 303

Query: 321 EPMGVIIQKRDGGFLYTTTDIACAKYRYETLGADRVLYFIDSRQHQHLMQAWTIVRKAGY 380
           EP+ VIIQK DGG+LY TTD+A  +YR   L ADRVLYF+D RQ  H  Q +++ + A +
Sbjct: 304 EPLPVIIQKADGGYLYATTDLAAMRYRSNVLKADRVLYFVDLRQALHFQQVFSLAKLAKF 363

Query: 381 IPENVSLEHHAFGMMLGKDGRPFKTRAGGTVRLADLLDEAQERAKALIESKNPELSAEEK 440
           + E++SLEH  FG M G+DGRPFKTR GG V+L DLLDEA  RA  L+ SKNP++     
Sbjct: 364 VREDMSLEHLGFGTMNGEDGRPFKTRTGGVVKLVDLLDEANTRALELVRSKNPDMDEATL 423

Query: 441 ANIANTVAMAAVKYADLSKHRTTDYVFDWDNMLAFEGNTAPYMQYAYTRVASVFAKAGVD 500
           A IA  V ++AVKYADLSK+RT+DY+F ++ ML+FEGNTAPY+ YAYTRVA +F +A  D
Sbjct: 424 AEIARVVGISAVKYADLSKNRTSDYIFSFEQMLSFEGNTAPYLLYAYTRVAGIFKRA-TD 482

Query: 501 MNELTGHIQITEEKEKALIAKLLQFEEAVQSVAREGQPHIMCSYLFELAGIFSSFYEACP 560
           ++     I +  EKEK L  KL QF E +  V  +GQPH++C YL+ELAG FSSFYEACP
Sbjct: 483 VDLSQAKIVLEHEKEKDLGNKLAQFGEILSRVVDKGQPHVLCGYLYELAGAFSSFYEACP 542

Query: 561 ILVAEQESIKQSRLKLAALTAKTIKQGLALLGIDTLERM 599
           +L A+ +  K SRL L+ LTA T+++GL LLGI+TLERM
Sbjct: 543 VLAADNDEQKHSRLLLSQLTASTLQKGLNLLGIETLERM 581