Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 695 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Pseudomonas fluorescens FW300-N2E2

 Score =  366 bits (939), Expect = e-105
 Identities = 241/697 (34%), Positives = 385/697 (55%), Gaps = 36/697 (5%)

Query: 9   DKLPSIPQRSMPAIGAPVMVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRP 68
           +K+ +   R +  +GA V VL  + M++LP+P  ++D     NI +S +++++++Y  RP
Sbjct: 6   NKVANEAVRRIEVVGAFV-VLGIVFMLILPLPTSVVDALIAINICISCLLIVLSLYLPRP 64

Query: 69  LDFAAFPTVLLIATLLRLALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLV 128
           L F++FP VLL+ TL RLAL+VA+TR++LL G      AG++++AFG+ V+GGN AVGLV
Sbjct: 65  LAFSSFPAVLLLTTLFRLALSVATTRLILLQGD-----AGHIVQAFGDFVVGGNLAVGLV 119

Query: 129 VFLILMIINFMVVTKGAGRISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEV 188
           +FLIL ++NF+V+TKG+ R++EV+ARFTLDALPGKQM+ID+DL A LID  +AR RR E+
Sbjct: 120 IFLILTVVNFLVITKGSERVAEVAARFTLDALPGKQMSIDSDLRANLIDVSEARRRREEL 179

Query: 189 TKEADFYGSMDGASKFVKGDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIG 248
            KE+  +G+MDGA KFVKGDAIAG++I+ IN+IGG S+GM+Q+D+G  E++ +Y +LTIG
Sbjct: 180 NKESQLFGAMDGAMKFVKGDAIAGLVIVVINLIGGFSVGMMQHDMGASESMHLYAVLTIG 239

Query: 249 DGLVAQIPSLLLSIGAAIMVTR-----QNTDEDMGQQVIFQLFDNPKALTITAGILFVMG 303
           DGL+AQIP+LL+S+ A +++TR     +     +G+++  QL   PKA  I +  +    
Sbjct: 240 DGLIAQIPALLISLTAGMIITRVSPQGEPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFA 299

Query: 304 IVPGMPHFAFLFLALLASGAAYWLHRKQKTKAENKNLPAKSDVETPTQRELSWDDVQPVD 363
            +PGMP   F+ +AL+   A       +   A   + PA  +V  P Q     +D++  D
Sbjct: 300 ALPGMPTLVFIVIALITGTAGIVQLYSRARLARQGDQPA--EVVAPAQN--GAEDLRSFD 355

Query: 364 VIGLEVGYRLIPLVDKDQGGELLERVKGVRKKLSQDFGFLIPPVHIRDNLELTPNSYR-- 421
                +      +       E ++ ++  R  L   FG  +PP  I  +  L  + +R  
Sbjct: 356 PTRAYLLQFSKAMEGNAAAEEAIQAIRKKRNALVAGFGLTLPPFEIEYSALLEDDEFRFC 415

Query: 422 ---ITLMGVAVGE--AEIRPDQELAINPGQVYGMIDGERTRDPAFGLDAVWIREDQREHA 476
              + ++    GE  A  R    L    GQV     G   RD    L   W+  D    A
Sbjct: 416 VHEVPMLRATFGERVAVARGPLPLEPRDGQV-----GSEVRDEQQWL---WLTPDDPLLA 467

Query: 477 QALGYTVVDSSTVLATHLSQLLTNNAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSL 536
                  V ++ +L   +S+ +     Q +G +E +++L  L    P+LV+  +   + L
Sbjct: 468 DE-RVEAVSAAELLVERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQE-LQRTMPL 525

Query: 537 GVVVKVLQNLLHEAIPIRDIRTIVQTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVE 596
                VLQ L  E +P+R +R I ++L E+    ++   LT   RI+LK  I  +    E
Sbjct: 526 ARFAAVLQRLAGEGVPLRAVRLIAESLIEHGQHERDVGALTDYARIALKSQIYHQYRD-E 584

Query: 597 PELPVITLIPELEQILHQTMQASGGES-AGIEPGLAERLQMALSHATQEQELKGEPAVLL 655
             L V  L PE E +L   ++ +  E+   +E      L M L      +  +   AVLL
Sbjct: 585 DGLHVWLLTPETEGLLRDALRQTQTETFFALESLHTRALVMQLREGFPLRAKR--VAVLL 642

Query: 656 TSGVLRSTLAKFVKNTIPNLRVLSYQEIPDEKQIRIV 692
            +  LR+ L   +++   ++ VL++ E+    Q+ ++
Sbjct: 643 VAQDLRAPLRDLLRDEFNHVPVLAFSELHSNAQVTVL 679