Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 710 a.a., Flagellar biosynthesis protein FlhA from Pseudomonas fluorescens FW300-N2E2

 Score =  842 bits (2176), Expect = 0.0
 Identities = 432/702 (61%), Positives = 551/702 (78%), Gaps = 14/702 (1%)

Query: 7   FADKLPSIPQRSMPAIGAPVMVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTR 66
           F+    ++   S   +G P+++L  LAM++LP+P FLLD+FFTFNIALS+VVLLV VY  
Sbjct: 8   FSTARSNVVDLSRGNLGVPLLLLVMLAMMMLPVPPFLLDVFFTFNIALSIVVLLVCVYAL 67

Query: 67  RPLDFAAFPTVLLIATLLRLALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVG 126
           RPLDFA FPT+LL+ATLLRLALNVASTRVV+L+G +G  AAG VI+AFG VVIGGNY VG
Sbjct: 68  RPLDFAVFPTILLVATLLRLALNVASTRVVMLHGQDGHAAAGKVIQAFGEVVIGGNYVVG 127

Query: 127 LVVFLILMIINFMVVTKGAGRISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRF 186
           +VVF ILMIINF+VVTKGAGRISEVSARFTLDA+PGKQMAIDADLNAGLIDQ QA++RR 
Sbjct: 128 IVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQGQAKLRRL 187

Query: 187 EVTKEADFYGSMDGASKFVKGDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLT 246
           EV +EA+FYGSMDGASKFV+GDAIAG+LILFIN+IGG+++G+ Q+++ F +A ++Y LLT
Sbjct: 188 EVAQEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGMAVGIFQHNMTFGDAGKVYALLT 247

Query: 247 IGDGLVAQIPSLLLSIGAAIMVTRQNTDEDMGQQVIFQLFDNPKALTITAGILFVMGIVP 306
           IGDGLVAQ+PSLLLS  AAIMVTR +  EDMG+Q+  Q+F +PKAL + AG++ VMG+VP
Sbjct: 248 IGDGLVAQLPSLLLSTAAAIMVTRASGSEDMGKQIGRQMFASPKALAVAAGLMAVMGLVP 307

Query: 307 GMPHFAFLFLALLASGAAYWLHRK---------QKTKAENKNLPAKSDVETPTQRELSWD 357
           GMPH +FL +A  A+G AY   +K         Q+ K + + LP  S       +EL WD
Sbjct: 308 GMPHISFLTMAAAAAGGAYLFWKKQNAQKVQALQEVKRQQELLP--SPARAMETKELGWD 365

Query: 358 DVQPVDVIGLEVGYRLIPLVDKDQGGELLERVKGVRKKLSQDFGFLIPPVHIRDNLELTP 417
           DV P+D+IGLEVGYRLIPLVD++QGG+LL R+KGVRKKLSQD GFL+P VHIRDNL+L P
Sbjct: 366 DVTPIDMIGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLAP 425

Query: 418 NSYRITLMGVAVGEAEIRPDQELAINPGQVYGMIDGERTRDPAFGLDAVWIREDQREHAQ 477
           ++YR+TLMGV + EAEI PD+ELAINPGQVYG ++G   +DPAFGL+AVWI   QR  AQ
Sbjct: 426 SAYRLTLMGVILAEAEIYPDRELAINPGQVYGSLNGITAKDPAFGLEAVWIEISQRAQAQ 485

Query: 478 ALGYTVVDSSTVLATHLSQLLTNNAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSLG 537
           +LGYTVVD+STV+ATHL+Q+L  ++++LIGHEEVQ LL++L++ +PKL E  VP  +SL 
Sbjct: 486 SLGYTVVDASTVVATHLNQILYKHSSELIGHEEVQQLLQVLAKGSPKLAEELVPGVVSLS 545

Query: 538 VVVKVLQNLLHEAIPIRDIRTIVQTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVEP 597
            ++KVLQ LL E +P+RDIR+I + ++  ASKSQ+   L AAVR+ + R IVQ I G E 
Sbjct: 546 QLLKVLQALLAEQVPVRDIRSIAEAIANNASKSQDTAALVAAVRVGVSRAIVQSIVGTES 605

Query: 598 ELPVITLIPELEQILHQTMQASG-GESAGI--EPGLAERLQMALSHATQEQELKGEPAVL 654
           ELPVITL P LEQIL  ++Q +G G   G+  EP +AE+LQ +L  A Q QE++G+P +L
Sbjct: 606 ELPVITLEPRLEQILLNSLQKAGQGSEEGVLLEPSMAEKLQRSLIEAAQRQEMQGQPVIL 665

Query: 655 LTSGVLRSTLAKFVKNTIPNLRVLSYQEIPDEKQIRIVQAVG 696
           L +G +R+ L++F +  +P L VL+YQEIPD KQ+ IV  VG
Sbjct: 666 LVAGPIRAMLSRFGRLAVPGLHVLAYQEIPDNKQVTIVATVG 707