Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 685 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Pseudomonas fluorescens FW300-N2E2

 Score =  365 bits (938), Expect = e-105
 Identities = 230/677 (33%), Positives = 378/677 (55%), Gaps = 21/677 (3%)

Query: 27  MVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPLDFAAFPTVLLIATLLRL 86
           +++  +AM+++P+P  L+D     NI +SL+V + + Y  R L ++ FP +LL+ TL RL
Sbjct: 22  LMVMIIAMLIIPLPTVLVDFLIGLNIVISLLVFMGSFYIERILSYSTFPALLLLTTLFRL 81

Query: 87  ALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVVFLILMIINFMVVTKGAG 146
           AL+++++R++L         AG +I +FG+ VIG +  VG V+F I+ I+ F+V+TKG+ 
Sbjct: 82  ALSISTSRLIL-----SQADAGEIIASFGDFVIGESLVVGFVIFSIVTIVQFIVITKGSE 136

Query: 147 RISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVTKEADFYGSMDGASKFVK 206
           R++EV+ARF+LD +PGKQM+ID DL AG ID  QAR +R  + +E+  YGS DGA KF+K
Sbjct: 137 RVAEVAARFSLDGMPGKQMSIDGDLKAGAIDAAQAREKRSVLERESQLYGSFDGAMKFIK 196

Query: 207 GDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGDGLVAQIPSLLLSIGAAI 266
           GDAIAGI+I+F+N IGG++IG+ Q  +    A+  YTLLTIGDGLVAQIP+LL++IGA  
Sbjct: 197 GDAIAGIIIIFVNFIGGMAIGVGQLGMDLSTALSTYTLLTIGDGLVAQIPALLIAIGAGF 256

Query: 267 MVTRQNTDE-DMGQQVIFQLFDNPKALTITAGILFVMGIVPGMPHFAFLFLALLASGAAY 325
           +VTR N D+ ++G+ ++ Q+  NP  L +TA +   +G++PG P   FL +A +     +
Sbjct: 257 IVTRVNGDDSNLGRNMLTQMLGNPFVLGVTALLAVGVGLLPGFPLLTFLSIAGVLGLVVF 316

Query: 326 WLHRKQKTKAENKNLPAKSDVETPTQRELSWDD--VQPVDVIGLEVGYRLIPLVDKDQGG 383
              RK   +A     P +S  E   Q  L  +   +  VD +  E    L+ LV K Q  
Sbjct: 317 VRQRKSSRQAS----PGESRAEAAEQNTLPSESGLLDDVDNLATET-IALMLLVPKTQ-L 370

Query: 384 ELLERVKGVRKKLSQ---DFGFLIPPVHIRDNLELTPNSYRITLMGVAVGEAEIRPDQEL 440
           E LE+ +   +  SQ   D+G  IP   +R +  L  +   + +  V   + +I  D   
Sbjct: 371 EALEKQRWAARFRSQFFVDYGLRIPEPRLRASEALPAHQVAVLINEVRAEQFDIHFDHWR 430

Query: 441 AINPGQVYGMIDGERTR-DPAFGLDAVWIREDQREHAQALGYTVVDSSTVLATHLSQLLT 499
            ++       +     R + +  L  VW+    RE  Q LGY +  +       L  LL 
Sbjct: 431 LLDYSPELDPLGFALVRGNDSNRLGGVWVSAADRERVQQLGYHLRPADEECYRCLVTLLA 490

Query: 500 NNAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSLGVVVKVLQNLLHEAIPIRDIRTI 559
            N  +  G +E + LL+ +    P L++  V   +++  + +VLQ L+ E I +R+++ I
Sbjct: 491 RNIQEFFGVQETKQLLDEMETRCPDLLKE-VYRHVTVQKIAEVLQRLIGERISVRNMKLI 549

Query: 560 VQTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVEPELPVITLIPELEQILHQTM-QA 618
           +++L+ +AS+ ++   L   VR ++ R I  +      +L V+ L PE E+++ + + Q 
Sbjct: 550 LESLAHWASREKDVLALVEHVRGAMARYISNKF-AQGNDLRVLLLSPEFEEVVRRGIRQT 608

Query: 619 SGGESAGIEPGLAERLQMALSHATQEQELKGEPAVLLTSGVLRSTLAKFVKNTIPNLRVL 678
           SGG    +EP  +E L   LS       +  +  VLL S  +R  + K ++     L V+
Sbjct: 609 SGGSFLNLEPAESEELMDRLSVGLDSVHIAHKDMVLLCSVDVRRYIKKLIEGRFRELDVM 668

Query: 679 SYQEIPDEKQIRIVQAV 695
           S+ EI +   + +++ +
Sbjct: 669 SFGEISESVSVNVIKTL 685