Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 698 a.a., Flagellar biosynthesis pathway, component FlhA from Pseudomonas stutzeri RCH2

 Score =  605 bits (1560), Expect = e-177
 Identities = 337/686 (49%), Positives = 459/686 (66%), Gaps = 14/686 (2%)

Query: 22  IGAPVMVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPLDFAAFPTVLLIA 81
           IG P+++L+ LAM++LP+P  LLD+ FTFNIA++++VLLV+V ++ PLDF+ FPTV+L+ 
Sbjct: 16  IGIPLIILSILAMIILPLPPQLLDILFTFNIAMAVLVLLVSVSSKSPLDFSLFPTVILVT 75

Query: 82  TLLRLALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVVFLILMIINFMVV 141
           TL+RL LNVASTRVVLL GH G GAAG VIEAFG VVIGGN+ VGLVVF+ILMIINF+V+
Sbjct: 76  TLMRLTLNVASTRVVLLEGHTGTGAAGKVIEAFGEVVIGGNFIVGLVVFVILMIINFIVI 135

Query: 142 TKGAGRISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVTKEADFYGSMDGA 201
           TKG  RISEV+ARFTLDALPGKQMAIDADLNAGL+ QE A+ RR EV KEADFYG+MDGA
Sbjct: 136 TKGGERISEVTARFTLDALPGKQMAIDADLNAGLLTQEDAKARRQEVAKEADFYGAMDGA 195

Query: 202 SKFVKGDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGDGLVAQIPSLLLS 261
           SKFV+GDAIAGILIL IN+ GG +IG+  +DLG  EA + Y LLTIGDGLVAQIP+LLLS
Sbjct: 196 SKFVRGDAIAGILILLINLFGGFAIGVFVHDLGAGEAFKQYALLTIGDGLVAQIPALLLS 255

Query: 262 IGAAIMVTRQNTDEDMGQQVIFQLFDNPKALTITAGILFVMGIVPGMPHFAFLFLALLAS 321
             AAI+VTR N   D+  QV  QL  NP +L   AGILFV+G+VPGMPH AFL  A L  
Sbjct: 256 TAAAIIVTRINESSDITSQVQRQLLANPASLYTVAGILFVLGMVPGMPHLAFLGFAALIG 315

Query: 322 GAAYWLHRKQKTKA-----ENKNLPAKSDVETPTQRELSWDDVQPVDVIGLEVGYRLIPL 376
             A+ +  ++   A     E + L    D E    + L+W+D+  V+ + + +GY+L+ L
Sbjct: 316 FIAWRVSLREPPAAGADLKEIQQLGQAMDKE--KAQSLAWEDIPLVERLSVSLGYKLVGL 373

Query: 377 VDKDQGGELLERVKGVRKKLSQDFGFLIPPVHIRDNLELTPNSYRITLMGVAVGEAEIRP 436
           V++  G  L  RV+GVR+ LS+  GFL+P V IRD+L L  + Y I + G  +  AE+  
Sbjct: 374 VNEASGAPLPARVRGVRQTLSEHLGFLLPEVQIRDSLRLKASQYDIYINGEKIDGAELHA 433

Query: 437 DQELAINPGQVYGMIDGERTRDPAFGLDAVWIREDQREHAQALGYTVVDSSTVLATHLSQ 496
           D+ +AI   ++YG IDG    DPA+ +  VWI+   +  A  LGY V+D ++V+ATHL++
Sbjct: 434 DRLMAIPSPELYGEIDGILGTDPAYRMQVVWIQPTDKSRALNLGYQVIDCASVIATHLNK 493

Query: 497 LLTNNAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSLGVVVKVLQNLLHEAIPIRDI 556
           ++  +   L  H++V++L++ L+  APKL E+ + + LS    ++V + LL E +P+RDI
Sbjct: 494 VIREHLPDLFKHDDVEHLMQRLTVQAPKLAES-LKNALSYTQQMRVYRQLLLEEVPLRDI 552

Query: 557 RTIVQTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVEPELPVITLIPELEQILHQTM 616
            TI  TL E +  +++P +L A VR +L+R IV  + G   EL V  L   LE  L   +
Sbjct: 553 ETIASTLLECSETTKDPVLLAADVRYALRRSIVSMVAGDRRELGVFVLENALENTLLNAL 612

Query: 617 ---QASGG---ESAGIEPGLAERLQMALSHATQEQELKGEPAVLLTSGVLRSTLAKFVKN 670
              Q +G    ++  +EP L  +LQ ++    ++    G P +L     LR  LA++ + 
Sbjct: 613 AIAQQAGPVSLDNIPVEPSLLNQLQNSMPVVKEKLRKDGHPPILTVMPQLRPLLARYARV 672

Query: 671 TIPNLRVLSYQEIPDEKQIRIVQAVG 696
             P L VLS  EIPD   + I+  +G
Sbjct: 673 FSPGLHVLSQNEIPDRVGVNILGTLG 698