Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 699 a.a., flagellar biosynthesis protein FlhA (RefSeq) from Shewanella loihica PV-4

 Score =  983 bits (2540), Expect = 0.0
 Identities = 499/690 (72%), Positives = 586/690 (84%), Gaps = 3/690 (0%)

Query: 10  KLPSIPQRSMPAIGAPVMVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPL 69
           ++  +   +   IG P++VLAALAM+VLPMPAFLLD+ F+FNIAL+LVVLLV +YT RPL
Sbjct: 9   QIKQVKPANFKGIGTPILVLAALAMIVLPMPAFLLDILFSFNIALALVVLLVAIYTDRPL 68

Query: 70  DFAAFPTVLLIATLLRLALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVV 129
           DFAAFPTVLL+ATLLRLALNVASTR+VLL GH G  AAG VIEAFG+VVIGGNYAVGLVV
Sbjct: 69  DFAAFPTVLLVATLLRLALNVASTRIVLLEGHNGGDAAGKVIEAFGSVVIGGNYAVGLVV 128

Query: 130 FLILMIINFMVVTKGAGRISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVT 189
           FLIL+IINF VVTKGAGRISEVSARFTLDA+PGKQMAIDADLNAG+++Q+QAR+RR EVT
Sbjct: 129 FLILIIINFAVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGILNQDQARIRRAEVT 188

Query: 190 KEADFYGSMDGASKFVKGDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGD 249
           KEADFYG+MDGASKFVKGDAIAGI+IL INI+GG  IGM Q+ L F  A+EIYTLLTIGD
Sbjct: 189 KEADFYGAMDGASKFVKGDAIAGIMILVINILGGFVIGMAQHGLDFSSAVEIYTLLTIGD 248

Query: 250 GLVAQIPSLLLSIGAAIMVTRQNTDEDMGQQVIFQLFDNPKALTITAGILFVMGIVPGMP 309
           GLVAQIP LLLSI AA+MVTRQN   DMGQ V+ Q+FDNPK+L I AG+L  MGIVPGMP
Sbjct: 249 GLVAQIPGLLLSIAAALMVTRQNESGDMGQMVMSQMFDNPKSLAIAAGVLLTMGIVPGMP 308

Query: 310 HFAFLFLALLASGAAYWLHRKQKTKAENKNLPAKSDVETPTQ---RELSWDDVQPVDVIG 366
           HFAFL   L+ +G AY+LHRK+    +     AKS   TP     +ELSWDDVQ VD IG
Sbjct: 309 HFAFLSFGLITAGGAYFLHRKKDLDRQRALEIAKSSPATPGDAKPKELSWDDVQQVDTIG 368

Query: 367 LEVGYRLIPLVDKDQGGELLERVKGVRKKLSQDFGFLIPPVHIRDNLELTPNSYRITLMG 426
           LEVGYRLIPLVDK QGGELL R+KGVRKKLSQ+ GFL+P VHIRDNL+L PN+YRI+LMG
Sbjct: 369 LEVGYRLIPLVDKGQGGELLGRIKGVRKKLSQELGFLVPAVHIRDNLDLAPNTYRISLMG 428

Query: 427 VAVGEAEIRPDQELAINPGQVYGMIDGERTRDPAFGLDAVWIREDQREHAQALGYTVVDS 486
           VA GEA+IR D ELAINPGQVYG +DG  T DPAFGL+AVWI  + REHAQ LGYTVVD+
Sbjct: 429 VASGEADIRHDCELAINPGQVYGKLDGVETTDPAFGLEAVWIAPELREHAQTLGYTVVDA 488

Query: 487 STVLATHLSQLLTNNAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSLGVVVKVLQNL 546
           +TV+ATHLSQLLTNNA++L+G+EEVQ L++ML++ +PKLV  F+PD L LG VVKV+QNL
Sbjct: 489 ATVVATHLSQLLTNNASKLLGYEEVQQLMDMLAKHSPKLVSGFIPDVLPLGTVVKVMQNL 548

Query: 547 LHEAIPIRDIRTIVQTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVEPELPVITLIP 606
           L+E + IRD++TIVQTL EY  KS + ++LTAAVRI+LKR+IVQEI+G EPE+PVITL P
Sbjct: 549 LNEGVSIRDLKTIVQTLLEYGPKSNDTEVLTAAVRIALKRMIVQEISGPEPEIPVITLAP 608

Query: 607 ELEQILHQTMQASGGESAGIEPGLAERLQMALSHATQEQELKGEPAVLLTSGVLRSTLAK 666
           ELEQ+LHQ+MQA+GGE   IEP LAER+Q +L  A+Q QE+ G+PA+LLTSG+LRSTL++
Sbjct: 609 ELEQMLHQSMQATGGEGPNIEPSLAERMQKSLLDASQRQEMVGQPAILLTSGMLRSTLSR 668

Query: 667 FVKNTIPNLRVLSYQEIPDEKQIRIVQAVG 696
           FVK+TIPNLRV+SYQE+PDEKQIRIV AVG
Sbjct: 669 FVKHTIPNLRVISYQEVPDEKQIRIVSAVG 698