Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 696 a.a., type III secretion protein, HrcV family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  399 bits (1025), Expect = e-115
 Identities = 242/681 (35%), Positives = 387/681 (56%), Gaps = 21/681 (3%)

Query: 27  MVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPLDFAAFPTVLLIATLLRL 86
           +++  +A+++LP+P  L+D     N+ALS V+L++++Y R  LDF+ FPT+LL  TL R+
Sbjct: 23  LLVVVVALMILPLPTPLVDTLIGANMALSFVMLMMSMYVRSVLDFSVFPTMLLFTTLFRV 82

Query: 87  ALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVVFLILMIINFMVVTKGAG 146
            LN+ +TR++LL        AG +I  FG   +GGN+ VG VVF+IL I+ F+V+ KGA 
Sbjct: 83  GLNITTTRLILLQAD-----AGEIIFVFGEYALGGNFVVGAVVFVILTIVQFLVIAKGAE 137

Query: 147 RISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVTKEADFYGSMDGASKFVK 206
           R++EV ARFTLDA+PGKQM+IDAD+ AG+ID E+A+ RR  V++E+  YG+MDGA KFVK
Sbjct: 138 RVAEVGARFTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNMVSQESQMYGAMDGAMKFVK 197

Query: 207 GDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGDGLVAQIPSLLLSIGAAI 266
           GD+IAG+++  +NI+GG  IG+ Q+ +   +A+  Y +LTIGDGLV+QIPSLL+SI A I
Sbjct: 198 GDSIAGMIVAVVNIVGGTVIGITQHGMTGADALHTYGILTIGDGLVSQIPSLLVSISAGI 257

Query: 267 MVTRQ-NTDEDMGQQVIFQLFDNPKALTITAGILFVMGIVPGMPHFAFLFLALLASGAAY 325
           ++TR  ++  ++G Q+  Q+F  PKAL +  G++F+  +VPG P      LAL   G  Y
Sbjct: 258 LITRTGDSGGNVGAQIGGQIFGQPKALLMAGGLVFLFALVPGFPKPQLFGLALAIGGFGY 317

Query: 326 WLHRKQKT------KAE-NKNLPAKSDVETPTQRELS-WDDVQPVDVIGLEVGYRLIPLV 377
            L R  +       +AE +++L   +   TP        DD  P   I L++   L   +
Sbjct: 318 VLQRMAEAPVAADPRAELSRSLAPAARPRTPRPGAAQPGDDFAPTVPIILDLSAELGEAL 377

Query: 378 DKDQGGELLERVKGVRKKLSQDFGFLIPPVHIRDNLELTPNSYRITLMGVAVGEAEIRPD 437
             D    L E +  +R+ L  D G   P ++IR +  L   SY + L  + +    +   
Sbjct: 378 HYD---ALNEELINLRRALYFDLGVPFPGINIRPSPGLEGLSYVLNLNEIPMSRGTLERG 434

Query: 438 QELAINPGQVYGMIDGERTRDPAF--GLDAVWIREDQREHAQALGYTVVDSSTVLATHLS 495
             LA +  +   M+         F   +D +W+ ++Q       G   +  + +LA HLS
Sbjct: 435 MSLARDTSENLAMLGVNARTGERFLPDVDPLWVPDEQLHLLDKAGIGHMSHARILAYHLS 494

Query: 496 QLLTNNAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSLGVVVKVLQNLLHEAIPIRD 555
            +L+ +A+  +G +E + LL+ +   AP LV       L +  + ++ Q L+ E I IRD
Sbjct: 495 LVLSRHASNFLGMQEAKYLLDRMEERAPDLVRE-ATRLLPVQRIAEIFQRLVQEQISIRD 553

Query: 556 IRTIVQTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVEPELPVITLIPELEQILHQT 615
           +R I++ L E++ K ++  +LT  VR +LKR I    +  +  LP I L P++E+ + + 
Sbjct: 554 LRNILEALIEWSPKEKDTVMLTEYVRGALKRQISYMHSRGQNMLPAILLDPQVEETIRKA 613

Query: 616 M-QASGGESAGIEPGLAERLQMALSHATQEQELKGEPAVLLTSGVLRSTLAKFVKNTIPN 674
           + Q S G    +EP + ER   A+  A        +  V++TS  +R  + + ++     
Sbjct: 614 IRQTSAGAFLALEPSVTERFMKAVGDAAGRYASHAQKPVIMTSMDIRRYVRRLIEGDHYG 673

Query: 675 LRVLSYQEIPDEKQIRIVQAV 695
           L V+SYQE+  E  ++ V  +
Sbjct: 674 LAVISYQELTPEISVQPVNRI 694