Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 697 a.a., type III secretion inner membrane protein, HrcV family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  405 bits (1040), Expect = e-117
 Identities = 244/691 (35%), Positives = 395/691 (57%), Gaps = 40/691 (5%)

Query: 26  VMVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPLDFAAFPTVLLIATLLR 85
           ++++  +A+++LP+P  L+D     N+ALS V+L++++Y +  LDF+ FPT+LL  TL R
Sbjct: 24  LLLVVVIALMILPLPTPLVDTLIGANMALSFVMLMMSMYVKSILDFSVFPTMLLFTTLFR 83

Query: 86  LALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVVFLILMIINFMVVTKGA 145
           + LN+ +TR++LL        AG +I  FG   +GGN+ VG VVF+IL I+ F+V+ KGA
Sbjct: 84  VGLNITTTRLILLQAD-----AGEIIFVFGEYALGGNFVVGAVVFVILTIVQFLVIAKGA 138

Query: 146 GRISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVTKEADFYGSMDGASKFV 205
            R++EV ARFTLDA+PGKQM+IDAD+ AG+ID E+A+ RR  V++E+  YG+MDGA KFV
Sbjct: 139 ERVAEVGARFTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNTVSQESQMYGAMDGAMKFV 198

Query: 206 KGDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGDGLVAQIPSLLLSIGAA 265
           KGD+IAG+++  +NI+GG  IG+ Q+ +   EA+  Y +LTIGDGLV+QIPSLL+SI A 
Sbjct: 199 KGDSIAGMIVALVNIVGGTVIGITQHGMAAGEALHTYGILTIGDGLVSQIPSLLVSISAG 258

Query: 266 IMVTRQ-NTDEDMGQQVIFQLFDNPKALTITAGILFVMGIVPGMPHFAFLFLALLASGAA 324
           I++TR  ++  ++G Q+  Q+F  PKAL +  G++F+  +VPG P    + LAL   G  
Sbjct: 259 ILITRSGDSGGNVGAQIGGQIFGQPKALLMAGGLVFLFALVPGFPKPQLMGLALALGGFG 318

Query: 325 YWLHRKQKTKAENKNLPAKSDVETPTQRELS--------------WDDVQPVDVIGLEVG 370
           Y L R  +       LPA++D      R L+               DD  P   I L++ 
Sbjct: 319 YVLRRMAE-------LPAETDPRAELSRSLAPAVKPRPARGGAQQGDDFAPTVPIILDLS 371

Query: 371 YRLIPLVDKDQGGELLERVKGVRKKLSQDFGFLIPPVHIRDNLELTPNSYRITLMGVAVG 430
             L   +D D   + L R   +R+ L  D G   P +++R N  L    Y + L  + + 
Sbjct: 372 PALGESLDYDSLNDELAR---LRRALYFDLGVPFPGINVRPNPALPGLCYVLNLNEIPMS 428

Query: 431 EAEIRPDQELAINPGQVYGMI-----DGERTRDPAFGLDAVWIREDQREHAQALGYTVVD 485
              +     L  +  +   M+     +GER       ++ +W+ ++Q    +  G   + 
Sbjct: 429 RGVLEKGMSLVRDTRENLAMMGVAVREGERFLPE---VEPLWVPDEQCRLLEKAGIGHMS 485

Query: 486 SSTVLATHLSQLLTNNAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSLGVVVKVLQN 545
            + +LA HLS +L+ +A+  IG +E + LL+ +   AP LV   V   L +  + ++ Q 
Sbjct: 486 HARILAYHLSLVLSRHASTFIGMQEAKYLLDRMEERAPDLVRE-VTRLLPVQRIAEIFQR 544

Query: 546 LLHEAIPIRDIRTIVQTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVEPELPVITLI 605
           L+ E + IRD+R+I++ L E+++K ++  +LT  VR +LKR I    +  +  LP I L 
Sbjct: 545 LVQEQVSIRDLRSILEALIEWSAKEKDTVMLTEYVRSALKRQISYMHSRGQNMLPAILLD 604

Query: 606 PELEQILHQTM-QASGGESAGIEPGLAERLQMALSHATQEQELKGEPAVLLTSGVLRSTL 664
           P +E+ + + + Q S G    +EP + ER   A++ A      + +  V++TS  +R  +
Sbjct: 605 PGVEETIRKAVRQTSAGAFLALEPAVTERFMKAVADAAGPYAQQTQKPVIMTSMDIRRYV 664

Query: 665 AKFVKNTIPNLRVLSYQEIPDEKQIRIVQAV 695
            + ++     L V+SYQE+  E  ++ V  +
Sbjct: 665 RRLIEGDHYTLAVMSYQELTPEISVQPVNRI 695