Pairwise Alignments

Query, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

Subject, 699 a.a., flagellar biosynthesis protein FlhA (RefSeq) from Shewanella sp. ANA-3

 Score =  964 bits (2492), Expect = 0.0
 Identities = 491/686 (71%), Positives = 590/686 (86%), Gaps = 11/686 (1%)

Query: 18  SMPAIGAPVMVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPLDFAAFPTV 77
           S   IG P++VLAALAM+VLP+P FLLD+ F+FNIAL+L+VLLV +YT RPLDFAAFPTV
Sbjct: 17  SFKGIGTPMLVLAALAMIVLPIPPFLLDVLFSFNIALALIVLLVAIYTDRPLDFAAFPTV 76

Query: 78  LLIATLLRLALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVVFLILMIIN 137
           LL+ATLLRLALNVASTRVVLL GH G  AAG VIEAFG+VVIGGNYAVGLVVF+IL+IIN
Sbjct: 77  LLVATLLRLALNVASTRVVLLEGHNGGDAAGKVIEAFGSVVIGGNYAVGLVVFIILIIIN 136

Query: 138 FMVVTKGAGRISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVTKEADFYGS 197
           F VVTKGAGRI+EVSARFTLDA+PGKQMAIDADLNAG+I+Q+QAR RR EVT+EADFYG+
Sbjct: 137 FAVVTKGAGRIAEVSARFTLDAMPGKQMAIDADLNAGIINQDQARTRRAEVTREADFYGA 196

Query: 198 MDGASKFVKGDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGDGLVAQIPS 257
           MDGASKFVKGDAIAGI+IL INI+GG  IG++Q+ L F +A+EIYTLLTIGDGLVAQIP 
Sbjct: 197 MDGASKFVKGDAIAGIMILVINILGGFIIGIVQHGLTFSQAVEIYTLLTIGDGLVAQIPG 256

Query: 258 LLLSIGAAIMVTRQNTDEDMGQQVIFQLFDNPKALTITAGILFVMGIVPGMPHFAFLFLA 317
           LLLSI AA+MVTRQN   DMGQ +I Q+FD+ K+L+I AG+LFVMGIVPGMPH AFL  A
Sbjct: 257 LLLSIAAALMVTRQNESGDMGQMLISQMFDSHKSLSIAAGVLFVMGIVPGMPHMAFLSFA 316

Query: 318 LLASGAAYWLHRKQKTKAENKNLPAKSDVET-PTQR------ELSWDDVQPVDVIGLEVG 370
           ++ +GAAY++ ++     E K   A   V+T PT+R      ELSWDDV  VD IGLEVG
Sbjct: 317 VITAGAAYFIFKRN----EAKRAKALEQVKTGPTERAEREPKELSWDDVHHVDTIGLEVG 372

Query: 371 YRLIPLVDKDQGGELLERVKGVRKKLSQDFGFLIPPVHIRDNLELTPNSYRITLMGVAVG 430
           YRLIPLVDK QGGELL R+KGVRKKLSQ+ GFL+P VHIRDNL+L+PN+YRI+LMGV VG
Sbjct: 373 YRLIPLVDKGQGGELLSRIKGVRKKLSQELGFLVPAVHIRDNLDLSPNAYRISLMGVVVG 432

Query: 431 EAEIRPDQELAINPGQVYGMIDGERTRDPAFGLDAVWIREDQREHAQALGYTVVDSSTVL 490
           EA+IR D ELAINPGQVYG +DG  TRDPAFGL+AVWI  + REHAQ LGYTVVD++TV+
Sbjct: 433 EADIRHDCELAINPGQVYGKLDGIETRDPAFGLEAVWIAPELREHAQTLGYTVVDAATVV 492

Query: 491 ATHLSQLLTNNAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSLGVVVKVLQNLLHEA 550
           ATH+SQ+LTNNAA+L+G+EEVQ L++ML++ +PKLV+ F+PD + LG VVKV+QNLL+E 
Sbjct: 493 ATHISQILTNNAAKLLGYEEVQQLMDMLAKHSPKLVDGFIPDVMPLGNVVKVMQNLLNEG 552

Query: 551 IPIRDIRTIVQTLSEYASKSQEPDILTAAVRISLKRLIVQEINGVEPELPVITLIPELEQ 610
           + +RD+RTIVQTL EY +KS + ++LTAAVRI+LKR+IVQEI+G E E+PVITL PELEQ
Sbjct: 553 VSVRDLRTIVQTLLEYGTKSNDTEVLTAAVRIALKRMIVQEISGPELEIPVITLAPELEQ 612

Query: 611 ILHQTMQASGGESAGIEPGLAERLQMALSHATQEQELKGEPAVLLTSGVLRSTLAKFVKN 670
           +LHQ+MQA+GG+   IEPGLAER+Q +L+ A Q+QE+ G+PA+LLTSG+LR+TL++FVK 
Sbjct: 613 MLHQSMQATGGDGPNIEPGLAERMQQSLADAAQKQEMVGQPAILLTSGMLRATLSRFVKY 672

Query: 671 TIPNLRVLSYQEIPDEKQIRIVQAVG 696
           TIPNLRV+SYQEIPDEKQIRIV AVG
Sbjct: 673 TIPNLRVISYQEIPDEKQIRIVSAVG 698