Pairwise Alignments

Query, 495 a.a., flagellar biosynthesis protein FlhF from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., GTP-binding signal recognition particle SRP54, G-domain protein from Pseudomonas syringae pv. syringae B728a

 Score =  255 bits (652), Expect = 2e-72
 Identities = 165/489 (33%), Positives = 257/489 (52%), Gaps = 72/489 (14%)

Query: 1   MKIKRFFAKDMKTALLQVKEELGVDAVIMSNKKVAGGVEIVAAVDGDTAPAPAKRYNSQP 60
           M++KRFFA DM+ A+  V++ELG +A I+ N+++AGGVE+       TA    K     P
Sbjct: 1   MQVKRFFAADMRQAMKLVRDELGAEAAIIGNRRIAGGVEL-------TAALDYKLSALAP 53

Query: 61  RHGYNQVSPSVAPTKSRELADDRVSLQSSADSGRSMTQRFANMLKQYSSADEQEHRAENE 120
           R              + EL D+    QS   S ++                E  +R++++
Sbjct: 54  R------------VPNMELEDELRKTQSRIVSAQA----------------ELNNRSDSD 85

Query: 121 DSLSALLKRQSENRAPQRNQTQRSQSSSERQRPDSPLGKLLQEDADARRKPRLD----PT 176
            S++  L                        +P +P        AD   +P L+    P 
Sbjct: 86  ASVNLQLFSG---------------------KPGNP--------ADTHIEPTLEEPPRPF 116

Query: 177 RYDRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEVERREPLRAMLIKRLERM 236
            Y      EP +     +SMR E+  +R LLE Q+  L W +++   P +A L +RL+R+
Sbjct: 117 AYAPPQAAEPAIGQRAYDSMRSELNGLRELLEVQLGSLAWNQLQGTRPQQANLWRRLQRV 176

Query: 237 GVSLEMADQLACYIPEETPPPKAWKALLGLVSDQIPVVKHDILKRGGVVALLGPTGVGKT 296
           G+S  ++  L   IPE   P +AW+ LL  ++  I V + + L+ GGV+A++GP G+GKT
Sbjct: 177 GLSGPLSRDLLSMIPEIDEPRQAWRMLLAHLARMIAVPEVEPLEEGGVIAMVGPAGMGKT 236

Query: 297 TTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNELADVIY 356
           TT+AKLAAR  ++YG  N+ALV+ D++RIGA EQL   GRI+  PV        L   + 
Sbjct: 237 TTLAKLAARYVLKYGPQNIALVSMDSFRIGAQEQLKTLGRILNVPVTHIDPGQSLVQALE 296

Query: 357 QLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHSYLVLPATAQRKVLQETIEHFR 416
            L  +R++L+DTAG+   D  L  QL++L    G    +YLVL  T+Q++VL      ++
Sbjct: 297 PLLRKRVVLIDTAGLQASDPALRMQLESLAGR-GIKSRNYLVLATTSQKQVLTAAYHSYK 355

Query: 417 RIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPEDIVIAQPKYMVAKANEL 476
           R  L+GCI+TKLDE  SLGE +S+ + + LPVAY+ +G R+P+D+   +   +V++A   
Sbjct: 356 RCGLAGCILTKLDETASLGEVLSLAISHELPVAYLTDGPRIPDDLHTPRRHQLVSRA--- 412

Query: 477 LEKSTEDEP 485
           +    +DEP
Sbjct: 413 VSVQMQDEP 421