Pairwise Alignments

Query, 495 a.a., flagellar biosynthesis protein FlhF from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., flagellar biosynthesis regulator FlhF (RefSeq) from Shewanella amazonensis SB2B

 Score =  371 bits (952), Expect = e-107
 Identities = 223/493 (45%), Positives = 305/493 (61%), Gaps = 43/493 (8%)

Query: 1   MKIKRFFAKDMKTALLQVKEELGVDAVIMSNKKVAGGVEIVAAVDGDTAPAPAKRYNSQP 60
           MKIKRFFAKDM+ AL QVKE LG DAVIMSNKKV GG+EIVAAVD D  P P+       
Sbjct: 1   MKIKRFFAKDMRAALAQVKETLGADAVIMSNKKVTGGIEIVAAVDYDE-PKPS------- 52

Query: 61  RHGYNQVSPSVAPTKSRELADDRVSLQSSADSGRSMTQRFANMLKQYSSADEQEHRAENE 120
                 + P VA     +++DD+VSL      GR+  +            + Q+      
Sbjct: 53  ------MEPKVAAPNPFDISDDKVSL-----GGRAPVR-----------TNRQKVNEAPA 90

Query: 121 DSLSALLKRQSENRAPQRNQTQRSQSSSERQRP-DSPLGKLLQEDADARRKPRLDPTRYD 179
           DSL ALL+RQ      Q   +  +       R  ++P    ++E   A R+    P    
Sbjct: 91  DSLQALLERQQSRMNQQMGHSVEADDMPAWARGLEAPAAPKMKE---APRQASFTPDADK 147

Query: 180 RKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEVERREPLRAMLIKRLERMGVS 239
            + P    +   EL++M+EE+ S+R LL HQVS LM ++  R +P+ AML  RL     S
Sbjct: 148 NRAPGRQQI---ELDAMKEELASLRNLLTHQVSSLMMEQKNRTDPVGAMLETRLLEAEFS 204

Query: 240 LEMADQLACYIPEETPPPKAWKALLGLVSDQIPVVKHDILKRGGVVALLGPTGVGKTTTV 299
             +A +LA  + +   P +  KAL   +++ +     DI++RGGVVA +GPTGVGKTT++
Sbjct: 205 PAVAAKLAG-LSQHYNPAELVKALPQSLANMLDNQGDDIVRRGGVVAFVGPTGVGKTTSI 263

Query: 300 AKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNELADVIYQLR 359
           AK+AAR A  +G+D VAL+TTD YRIGA EQL+ YG+IMGCPV+ A D NEL  ++YQLR
Sbjct: 264 AKIAARFAAHHGADQVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDLNELQQILYQLR 323

Query: 360 NRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHSYLVLPATAQRKVLQETIEHFRRIP 419
           NR+L+L+DTAGMGQRD+RL EQLD L   S   I SYLVL AT+QR+VLQ+ ++HF+RIP
Sbjct: 324 NRKLVLIDTAGMGQRDMRLVEQLDNLTANSALPIRSYLVLSATSQRRVLQDAVKHFQRIP 383

Query: 420 LSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPEDIVIAQPKYMVAKANELLEK 479
           LSG ++TKLDE +SL   +SV++Q+ LP++Y+ +GQRVPED+ +A    +  +A + L  
Sbjct: 384 LSGAVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPEDMKVADTLALARQALDAL-- 441

Query: 480 STEDEPHYWTSDS 492
              +EP Y   D+
Sbjct: 442 ---NEPEYQGIDN 451