Pairwise Alignments

Query, 495 a.a., flagellar biosynthesis protein FlhF from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., flagellar biosynthesis regulator FlhF (RefSeq) from Shewanella loihica PV-4

 Score =  367 bits (942), Expect = e-106
 Identities = 218/493 (44%), Positives = 302/493 (61%), Gaps = 46/493 (9%)

Query: 1   MKIKRFFAKDMKTALLQVKEELGVDAVIMSNKKVAGGVEIVAAVDGDTAPAPAKRYNSQP 60
           MKIKRF AKDM++AL QVKE LG DAVIMSNKKV GG+EIVAAVD D       + ++ P
Sbjct: 1   MKIKRFLAKDMRSALAQVKETLGSDAVIMSNKKVTGGIEIVAAVDYDEPKPSVAKNDAAP 60

Query: 61  RHGYNQVSPSVAPTKSRELADDRVSLQSSADSGRSMTQRFANMLKQYSSADEQEHRAENE 120
                 +SPS       +LA+++VS+                  +Q    + ++  +   
Sbjct: 61  ------LSPSFL-----DLAEEKVSIG-----------------RQPIKTESKKQPSPVA 92

Query: 121 DSLSALLKRQSENRAPQRNQTQRSQS-----------SSERQRPDSPLGKLLQEDADARR 169
           DSL ALL+RQ    + Q +Q+  +             S E   P+   G      A+   
Sbjct: 93  DSLQALLERQQNRVSQQLSQSNEALEMPAWAQGLKAPSDEMAAPNMHGGMQANPHANTHE 152

Query: 170 KPRLDPTRYDRKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEVERREPLRAML 229
               +  + D+  P       SE+ESMREE+ S+R LL HQV+ L+ ++  R +P+ AML
Sbjct: 153 SQNFNRAKRDKSAP------ASEIESMREELASLRNLLTHQVTSLLTEQKSRLDPVGAML 206

Query: 230 IKRLERMGVSLEMADQLACYIPEETPPPKAWKALLGLVSDQIPVVKHDILKRGGVVALLG 289
             RL     S E+A +L+  + E   P    KAL   +++ +     DI+++GGVVA +G
Sbjct: 207 ESRLLDAEFSPEVAAKLSA-LSEHYVPADLVKALPRSLANMLDNQGDDIVRQGGVVAFVG 265

Query: 290 PTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSN 349
           PTGVGKTT+VAKLAAR A ++GSD VAL+TTD YRIGA+EQL+ YG+IMGCPV+ A D N
Sbjct: 266 PTGVGKTTSVAKLAARFAAQHGSDQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLN 325

Query: 350 ELADVIYQLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHSYLVLPATAQRKVLQ 409
           EL  ++YQ RNR+L+L+DTAGMGQRDVRL +QLD L   S   I SYLVL +T+QR+VL+
Sbjct: 326 ELEQILYQFRNRKLVLIDTAGMGQRDVRLFQQLDNLTANSRLPIRSYLVLSSTSQRRVLE 385

Query: 410 ETIEHFRRIPLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPEDIVIAQPKYM 469
           + +  F RIPLSG I+TKLDE ++L   +SV++Q+ LP++Y+ +GQRVPED+ +A    +
Sbjct: 386 DAVAQFTRIPLSGAILTKLDESVALAPALSVLIQSGLPLSYVTDGQRVPEDMQVADTLAL 445

Query: 470 VAKANELLEKSTE 482
             KA  +LEK  +
Sbjct: 446 ANKALSVLEKKVQ 458