Pairwise Alignments

Query, 495 a.a., flagellar biosynthesis protein FlhF from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., flagellar biosynthetic protein FlhF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  363 bits (932), Expect = e-105
 Identities = 224/483 (46%), Positives = 305/483 (63%), Gaps = 43/483 (8%)

Query: 1   MKIKRFFAKDMKTALLQVKEELGVDAVIMSNKKVAGGVEIVAAVDGDTAPAPAKRYNSQP 60
           MKIKRFFAKDM+ AL QVK+ LG DAVIMSNKKV GG+EIVAAVD D   A A       
Sbjct: 1   MKIKRFFAKDMRAALAQVKDTLGSDAVIMSNKKVNGGIEIVAAVDYDEPKAKAS------ 54

Query: 61  RHGYNQVSPSVAPTKSRELADDRVSLQSSADSGRSMTQRFANMLKQYSSADEQEHRAENE 120
                    + APT   +++DD VSL   A        R    LK  + AD         
Sbjct: 55  ---------AAAPT-FMDVSDDLVSLGGKAPI------RAETKLKPSAPAD--------- 89

Query: 121 DSLSALLKRQSENRAPQRNQTQRSQSSSERQRPDSPL-GKLLQEDADARRKPRLDPTRYD 179
            SL ALL++Q +NR  Q       Q + ++Q  + P   K LQ  A A+ + R     +D
Sbjct: 90  -SLQALLEKQ-QNRLNQ-------QLTHQQQDAELPAWAKGLQAPAAAKAERRDIANSFD 140

Query: 180 RKVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEVERREPLRAMLIKRLERMGVS 239
           +K P+      ++LE+MR+E+ S+R LL HQVS LM +  +R +P+ AML  +L     S
Sbjct: 141 KK-PQTSQKQNADLEAMRDELASLRNLLTHQVSALMTEHKKRIDPVGAMLESKLLEAEFS 199

Query: 240 LEMADQLACYIPEETPPPKAWKALLGLVSDQIPVVKHDILKRGGVVALLGPTGVGKTTTV 299
             +A +LA  + +   P +  +AL   +++ +     DI+K+GGVVAL+GPTGVGKTT++
Sbjct: 200 PAVASKLAA-LSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVVALVGPTGVGKTTSL 258

Query: 300 AKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNELADVIYQLR 359
           AKLAAR A  +G+D VAL+TTD YRIGA+EQL+ YG+IMGCPV+ A D  EL  ++YQ R
Sbjct: 259 AKLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLAELEQILYQFR 318

Query: 360 NRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHSYLVLPATAQRKVLQETIEHFRRIP 419
           NR+L+L+DTAGMGQRD+RL +QLD L   S   I SYLVL AT QR+VLQ+ + HF+RIP
Sbjct: 319 NRKLVLIDTAGMGQRDMRLYQQLDNLTANSRIPIRSYLVLSATGQRRVLQDAVNHFKRIP 378

Query: 420 LSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPEDIVIAQPKYMVAKANELLEK 479
           LSG ++TKLDE +SL   +SV++Q+ LP++Y+ +GQRVPED+ +A    +  +A   LE 
Sbjct: 379 LSGVVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPEDMKVADTLMLAEQALAALEN 438

Query: 480 STE 482
           + +
Sbjct: 439 TEQ 441