Pairwise Alignments

Query, 495 a.a., flagellar biosynthesis protein FlhF from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., flagellar biosynthesis regulator FlhF from Burkholderia phytofirmans PsJN

 Score =  226 bits (576), Expect = 2e-63
 Identities = 121/322 (37%), Positives = 197/322 (61%), Gaps = 10/322 (3%)

Query: 174 DPTRYDRKVPEEPMVAVSEL--ESMREEMTSIRRLLEHQVSGLMWQEVERREPLRAMLIK 231
           D TR    V E     + ++  +++  E++S+R ++E   +GL+W E +RR P+RA L K
Sbjct: 296 DDTRTPASVAEAIKARMEQVVNDTVMSELSSMRGMMEEHFAGLLWGERQRRNPVRASLTK 355

Query: 232 RLERMGVSLEMADQLACYIPEETPPPKAWKALLGLVSDQ-IPVVKHD--ILKRGGVVALL 288
            L   G S ++   +   +P++          +  V D  +PV++ +  +++RGGV AL+
Sbjct: 356 HLFAAGFSAQLVQMMVDNLPDDIESMDGGMDWVRSVLDSNLPVMEDEDALMERGGVFALM 415

Query: 289 GPTGVGKTTTVAKLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDS 348
           GPTGVGKTTT AKLAAR  M +G+  VAL+TTD+YRIG HEQL I+G+I+G  V   KD 
Sbjct: 416 GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVSVHAVKDG 475

Query: 349 NELADVIYQLRNRRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHSYLVLPATAQRKVL 408
            +L   + +LRN+ ++L+DT GM QRD  +S+Q+  ++  +G+ +   L+L AT+    L
Sbjct: 476 ADLQLALSELRNKHIVLIDTIGMSQRDRLVSDQI-AMLCHAGQPVQRLLLLNATSHGDTL 534

Query: 409 QETIEHFRRI----PLSGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPEDIVIA 464
            E ++ ++R     PL+GCI+TKLDE  +LG  +  V++  LPV Y++ GQ+VPE++ +A
Sbjct: 535 NEVVQAYQRAPDQQPLAGCILTKLDEATNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVA 594

Query: 465 QPKYMVAKANELLEKSTEDEPH 486
             K+++     +   ++   PH
Sbjct: 595 TKKFLIKSTFCIPRDNSPFVPH 616



 Score = 42.4 bits (98), Expect = 5e-08
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 19/144 (13%)

Query: 1   MKIKRFFAKDMKTALLQVKEELGVDAVIMSNKKV-AGGVEIVAAVDGD---------TAP 50
           M I++F     + AL  V+E LG DAV++SN+ +  G VEIVA  D D          A 
Sbjct: 1   MNIRKFVGATSRDALRLVREALGADAVVLSNRTMDDGSVEIVALADSDLVALSPKVPRAG 60

Query: 51  APAKRYNS------QPRHGYNQVSPSVAPTKSRELADDRVSLQSSADSGRSMTQRFANML 104
           A A++  S      +P     +  P+ AP ++   A     + SS   G S      ++ 
Sbjct: 61  AAAQQVGSMNAMAGRPALAAPRAMPAAAPMQANPYASGMPDVFSSV-FGASPEAGAEHLG 119

Query: 105 KQYSSADEQEHRAENEDSLSALLK 128
              S +D  +  A   D+L+A LK
Sbjct: 120 NGASYSDHTDDDA--SDALAAALK 141