Pairwise Alignments

Query, 495 a.a., flagellar biosynthesis protein FlhF from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., flagellar biosynthesis regulator FlhF (RefSeq) from Shewanella sp. ANA-3

 Score =  360 bits (924), Expect = e-104
 Identities = 220/482 (45%), Positives = 302/482 (62%), Gaps = 41/482 (8%)

Query: 1   MKIKRFFAKDMKTALLQVKEELGVDAVIMSNKKVAGGVEIVAAVDGDTAPAPAKRYNSQP 60
           MKIKRFFAKDM+ AL QVK+ LG DAVIMSNKKV GG+EIVAAVD D   A A       
Sbjct: 1   MKIKRFFAKDMRAALAQVKDTLGSDAVIMSNKKVNGGIEIVAAVDYDEPKAKA------- 53

Query: 61  RHGYNQVSPSVAPTKSRELADDRVSLQSSADSGRSMTQRFANMLKQYSSADEQEHRAENE 120
                   P+ APT   +++DD VSL + A        R    LK  + AD         
Sbjct: 54  --------PATAPT-FMDVSDDLVSLGAKAPI------RAETKLKPSAPAD--------- 89

Query: 121 DSLSALLKRQSENRAPQRNQTQRSQSSSERQRPDSPLGKLLQEDADARRKPRLDPTRYDR 180
            SL ALL++Q       R   Q +    + + P    G  LQ  A  + + R     +D+
Sbjct: 90  -SLQALLEKQQS-----RLNQQLTHQQQDAELPAWAQG--LQAPAVPKAERRDMGQTFDK 141

Query: 181 KVPEEPMVAVSELESMREEMTSIRRLLEHQVSGLMWQEVERREPLRAMLIKRLERMGVSL 240
           K P+      +++E+MR+E+ S+R LL HQVS LM +  +R +P+ AML  +L     S 
Sbjct: 142 K-PQVSQKQNADIEAMRDELASLRNLLTHQVSALMTEHKKRIDPVGAMLESKLLEAEFSP 200

Query: 241 EMADQLACYIPEETPPPKAWKALLGLVSDQIPVVKHDILKRGGVVALLGPTGVGKTTTVA 300
            +A++LA  + +   P +  +AL   +++ +     DI+K+GGVVAL+GPTGVGKTT++A
Sbjct: 201 AVANKLAA-LSQHYTPAELVRALPQSLANMLDNQGDDIVKQGGVVALVGPTGVGKTTSLA 259

Query: 301 KLAARAAMEYGSDNVALVTTDTYRIGAHEQLSIYGRIMGCPVRVAKDSNELADVIYQLRN 360
           KLAAR A  +G+D VAL+TTD YRIGA+EQL+ YG+IMGCPV+ A D  EL  ++YQ RN
Sbjct: 260 KLAARFAAHHGADQVALITTDHYRIGAYEQLATYGKIMGCPVKQAHDLAELEQILYQFRN 319

Query: 361 RRLILVDTAGMGQRDVRLSEQLDTLMQESGETIHSYLVLPATAQRKVLQETIEHFRRIPL 420
           R+L+L+DTAGMGQRD+RL +QLD L   S   I SYLVL AT QR+VLQ+ + HF+RIPL
Sbjct: 320 RKLVLIDTAGMGQRDMRLYQQLDNLTANSRIPIRSYLVLSATGQRRVLQDAVNHFKRIPL 379

Query: 421 SGCIMTKLDECLSLGEFVSVVVQNALPVAYIANGQRVPEDIVIAQPKYMVAKANELLEKS 480
           SG ++TKLDE +SL   +SV++Q+ LP++Y+ +GQRVPED+ +A    +  +A   LE +
Sbjct: 380 SGVVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQRVPEDMKVADTLLLAEQALAALENT 439

Query: 481 TE 482
            +
Sbjct: 440 EQ 441