Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Pseudomonas fluorescens FW300-N2E2

 Score = 67.8 bits (164), Expect = 5e-16
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 22/204 (10%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 405 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 464

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGV 154
            NR   Q +     E+ R+PT  E+ + + M  ++   VL      I+    +G ++   
Sbjct: 465 LNRISRQMLQ----EMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSH 520

Query: 155 SDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKE 210
             D I   E+    SP      ES ++A  E +  L  REA VL + +  ++N    L+E
Sbjct: 521 LGDFI---EDSTMQSPIDVATVESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEE 577

Query: 211 IGEVLGVSESRVSQILSQSMQRLR 234
           +G+   V+  R+ QI ++++++LR
Sbjct: 578 VGKQFDVTRERIRQIEAKALRKLR 601