Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 247 a.a., RNA polymerase sigma factor for flagellar operon from Pseudomonas fluorescens FW300-N2E2

 Score =  246 bits (628), Expect = 3e-70
 Identities = 130/234 (55%), Positives = 164/234 (70%), Gaps = 12/234 (5%)

Query: 14  NSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETY 73
           ++Q   +E+Y+ LVKRIA+HL+ RLP SV +EDLIQAGM+GLLE    YD SKGASFETY
Sbjct: 16  DAQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSNKYDASKGASFETY 75

Query: 74  AGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQ 133
           AGIRIRGAMLD++R+GDW PRSVH++ R +S AI  +E +  RD  D EVA  L +SL+ 
Sbjct: 76  AGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVAAELQLSLDD 135

Query: 134 YHSVLMDINCSRIVGIEDL-------GVSDDAISPFEEGEDNSPFHGVAEESFRKALVES 186
           Y+ +L D   SR+   +DL       G+ +D  S   E     P   + +E F+ AL ++
Sbjct: 136 YYGILNDTLGSRLFSFDDLLQDGEHEGLHEDNASAHME-----PSRDLEDERFQSALADA 190

Query: 187 IKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSW 240
           I +LPERE LVL+LYYDEELNLKEIGEVLGVSESRVSQ+ SQ   RLR +L  W
Sbjct: 191 IANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRGRLGEW 244