Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 244 a.a., RNA polymerase sigma factor, FliA/WhiG family from Pseudomonas stutzeri RCH2

 Score =  122 bits (305), Expect = 9e-33
 Identities = 83/242 (34%), Positives = 125/242 (51%), Gaps = 22/242 (9%)

Query: 1   MNKALTYDQYGNL---------NSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAG 51
           MN   + D YG            ++Q +L +Y  LVKRI   L  +    +  ED+ Q G
Sbjct: 1   MNATCSVDYYGASPASPALFAPGAEQRWLMQYLPLVKRIVRQLSLQANQVLDREDMEQIG 60

Query: 52  MVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLE 111
           M+GLLE  + Y G     F  +A +RIRGA+LD++RR DW PR V +   ++  AI  L 
Sbjct: 61  MIGLLEGLRRY-GEPDEQFGRFAALRIRGAILDELRRQDWRPRQVRQQAHKVRDAIRELT 119

Query: 112 GELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPF 171
            +L   P+D E+  F  +  + Y + L   +   I  +++L          + G ++ P 
Sbjct: 120 RQLGHSPSDEEIKTFTGLDEKDYQAFLWADSSEAIESLDEL---------LQSGHEHFPD 170

Query: 172 HG-VAEESFRK--ALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQ 228
              + EE   K   L +++  L ERE LVL+LYY  EL+LKEI  VL VS++RV Q+  Q
Sbjct: 171 TAELFEERLLKERLLEQALSRLDERERLVLTLYYQHELSLKEIALVLEVSDARVCQLSKQ 230

Query: 229 SM 230
           ++
Sbjct: 231 AI 232