Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 241 a.a., RNA polymerase sigma factor, FliA/WhiG family from Pseudomonas stutzeri RCH2

 Score =  252 bits (643), Expect = 5e-72
 Identities = 131/237 (55%), Positives = 171/237 (72%), Gaps = 12/237 (5%)

Query: 14  NSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETY 73
           ++Q   +++Y+ LVKRIA+HL+ RLP SV ++DLIQAGM+GLLEA K YD  KGASFETY
Sbjct: 10  DAQYRLIDQYAPLVKRIAYHLLARLPASVQVDDLIQAGMIGLLEAAKKYDAGKGASFETY 69

Query: 74  AGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQ 133
           AGIRIRG MLD++R+GDW PRSVH+++R +S+AI  +E +  RD  D EVA  L +SL++
Sbjct: 70  AGIRIRGTMLDEVRKGDWAPRSVHRNSRMVSEAIRTIEAKTGRDAKDHEVAAELKLSLDE 129

Query: 134 YHSVLMDINCSRIVGIEDL-------GVSDDAISPFEEGEDNSPFHGVAEESFRKALVES 186
           Y+ +L D   SR+   +DL        + +DA S   E     PF  + +E F++ALV++
Sbjct: 130 YYGILGDTLGSRLFSFDDLLQEGEHGELQEDAASLHPE-----PFRDLEDERFQQALVDA 184

Query: 187 IKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSWTRN 243
           I +LPERE LVLSLYYDEELNLKEIG+VLGVSESRVSQ+ SQ   RLR +L  W  N
Sbjct: 185 IANLPEREKLVLSLYYDEELNLKEIGQVLGVSESRVSQLHSQCAARLRARLGEWRAN 241