Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., RNA polymerase sigma factor RpoD from Xanthomonas campestris pv. campestris strain 8004

 Score = 60.8 bits (146), Expect = 6e-14
 Identities = 63/247 (25%), Positives = 118/247 (47%), Gaps = 21/247 (8%)

Query: 1   MNKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQK 60
           +++A+ Y +     +++  +E    LV  IA     R    +   DLIQ G +GL++A  
Sbjct: 371 ISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVD 427

Query: 61  NYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHKHNREISQAIAVLEGE 113
            ++  +G  F TYA   IR A+   + D  R   +P     +++K NR   Q +     +
Sbjct: 428 KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ----Q 483

Query: 114 LNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDA-ISPF-EEGEDNSPF 171
             R+ T  E+AK ++M  ++   V M I    I     +G  +D+ +  F E+    SP 
Sbjct: 484 FGREATPEELAKEMDMPEDKIRKV-MKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPI 542

Query: 172 HGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKEIGEVLGVSESRVSQILS 227
                 +  + + + +  L  REA VL + +  ++N    L+E+G+   V+  R+ QI +
Sbjct: 543 DNTTNINLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 602

Query: 228 QSMQRLR 234
           +++++LR
Sbjct: 603 KALRKLR 609