Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., RNA polymerase, sigma 70 subunit, RpoD from Pseudomonas syringae pv. syringae B728a

 Score = 67.8 bits (164), Expect = 5e-16
 Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 22/204 (10%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 406 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 465

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGV 154
            NR   Q +     E+ R+PT  E+ + + M  ++   VL      I+    +G ++   
Sbjct: 466 LNRISRQMLQ----EMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSH 521

Query: 155 SDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKE 210
             D I   E+    SP      ES ++A  E +  L  REA VL + +  ++N    L+E
Sbjct: 522 LGDFI---EDSTMQSPIDVATVESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEE 578

Query: 211 IGEVLGVSESRVSQILSQSMQRLR 234
           +G+   V+  R+ QI ++++++LR
Sbjct: 579 VGKQFDVTRERIRQIEAKALRKLR 602