Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 369 a.a., RNA polymerase sigma factor, RpoD/SigA family from Synechocystis sp000284455 PCC 6803

 Score = 74.7 bits (182), Expect = 2e-18
 Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 18/221 (8%)

Query: 26  LVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDD 85
           LV  IA   + R  P +   DLIQ G +GL  A + +D  KG  F TYA   IR A+   
Sbjct: 143 LVVSIAKRYLNRGVPFL---DLIQEGAIGLNRAAEKFDPDKGYKFSTYAYWWIRQAITRT 199

Query: 86  I---RRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVL---- 138
           I    R   +P  V +   +I +A   L+ EL R+P + E+A  L+++  Q   +L    
Sbjct: 200 IANDARTIRLPIHVVEKLNKIKKAQRSLKQELKRNPNEGELAAALDITPAQLRQLLQLRR 259

Query: 139 MDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFRKALVESI-KSLPEREALV 197
             ++ +  VG    G   + +   E+ +   P   + E   R+ +VE + + L ERE  V
Sbjct: 260 QSLSLNHRVG---KGEDTELVDLLEDQQLQLPEDLMNESMLRREIVEVLAEVLTEREMEV 316

Query: 198 LSLYY----DEELNLKEIGEVLGVSESRVSQILSQSMQRLR 234
           + L Y     +   L+E+G +  +S  RV QI S++M++LR
Sbjct: 317 ICLRYGIASHQSYTLEEVGNMFNLSRERVRQIQSKAMRKLR 357