Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., RNA polymerase sigma factor SigC from Synechococcus elongatus PCC 7942

 Score = 62.4 bits (150), Expect = 1e-14
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 7/196 (3%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDDI---RRGDWVPRSVHKHNRE 102
           DL+Q G +GL  A + +D +KG  F TYA   IR  +   I    R   +P  V +    
Sbjct: 187 DLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNR 246

Query: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPF 162
           I +A   +     R     E+A+ L M+ +Q   VL+ +  S  +        D  +   
Sbjct: 247 IKKAQRKIAQTKGRTANLEEIAQELEMTPDQVREVLLRVPKSISLETRVGKEKDTELGDL 306

Query: 163 EEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYY----DEELNLKEIGEVLGVS 218
            E  D +P   + +ES    L   +  L  RE  V+ + +     +  +L EIG+VL +S
Sbjct: 307 LETTDFTPEERLTQESLSNDLQRLLLELNHRERDVIRMRFGLRDGQIYSLAEIGQVLDLS 366

Query: 219 ESRVSQILSQSMQRLR 234
             RV QI ++++Q+LR
Sbjct: 367 RERVRQIEAKALQKLR 382