Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., RNA polymerase sigma factor SigF from Synechococcus elongatus PCC 7942

 Score = 72.0 bits (175), Expect = 1e-17
 Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 9/218 (4%)

Query: 26  LVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDD 85
           LV++IAH L  +   S   EDL Q G +GL+ A + +   +G +F ++A   IRG +L  
Sbjct: 37  LVRKIAHRLSRQC--SEPYEDLEQIGFMGLIRAIERFQPHQGCAFSSFAVPYIRGEILHF 94

Query: 86  IR---RGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDIN 142
           +R       +PR   +  R+  Q   VL  E  R PT+ E+A  LN+S+ ++  + +   
Sbjct: 95  LRDSCHSIRIPRRWQELQRQGQQLREVLRHEWGRAPTEQELAFALNLSMTEWQEIHL-AR 153

Query: 143 CSRIVGIEDLGVS---DDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLS 199
            +R+    D  +S   D +++  E   D S     A    R+ LVE+I  L E+    + 
Sbjct: 154 RNRMPMSLDATLSQAGDSSVTLVETLPDTSQQWQQAALEERQQLVEAIGQLEEKARTAIE 213

Query: 200 LYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKL 237
             Y   L  KE  +  G+S   +++ +++ +Q++   L
Sbjct: 214 SVYLRGLTRKEAAQQFGISPMTITRRINRGVQKIAEHL 251