Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 320 a.a., group2 RNA polymerase sigma factor SigB from Synechococcus elongatus PCC 7942

 Score = 73.6 bits (179), Expect = 5e-18
 Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 7/198 (3%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDDI---RRGDWVPRSVHKHNRE 102
           DLIQ G +GL    + +D SKG  F TYA   IR A+   I    R   +P  + +   +
Sbjct: 113 DLIQEGTLGLERGVEKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNK 172

Query: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPF 162
           + +    L  +L R  T +E+A+ L + LEQ    +        + ++     D  +   
Sbjct: 173 LKKTQRELSQQLGRSATASELAEVLELPLEQVREYIQMNRQPVSLDVKVGDSQDTELQEL 232

Query: 163 EEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYY----DEELNLKEIGEVLGVS 218
            E E +SP   V +ES R+ L   +  L  ++  V++L Y     + L+L ++GE L +S
Sbjct: 233 LEDEQSSPSDYVEQESLRRDLRNLMAELTPQQQAVIALRYGLDEGDSLSLAKVGERLNIS 292

Query: 219 ESRVSQILSQSMQRLRTK 236
             RV ++  Q+M  LR +
Sbjct: 293 RERVRKLERQAMDHLRRR 310