Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 259 a.a., RNA polymerase sigma factor SigF from Synechococcus elongatus PCC 7942

 Score = 68.2 bits (165), Expect = 2e-16
 Identities = 57/226 (25%), Positives = 110/226 (48%), Gaps = 21/226 (9%)

Query: 26  LVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDD 85
           LV++ A+  + R P S   E+L+Q G +GL+ A   ++  +G +F ++A   IRG +   
Sbjct: 39  LVRQEAYRWVQRCPES--FEELVQIGSLGLIAAIDRFELERGKAFSSFAVPYIRGEIQHY 96

Query: 86  IRRGDW---VPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDIN 142
           +R       VPR   + +++I      L+ EL R PT+ E+ + L +  E++  V     
Sbjct: 97  LRDRSGTVRVPRRWAELHQQIDPLRHKLQRELGRSPTEEELRQGLGLDAEEWQEV----- 151

Query: 143 CSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFRK---------ALVESIKSLPER 193
             R++G     +S D     +E +  S    +A+  +R           L ++++ L +R
Sbjct: 152 --RLIGRNRTTLSLDQPLYADEEQVTSLGDSIADPKYRSFQLAEEDRIRLQQAMQLLEQR 209

Query: 194 EALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSS 239
              +L   +  +L  +E+ E LG+S   VS+ + + ++ L++ L S
Sbjct: 210 TREILEFVFFYDLTQREVAEKLGLSAVTVSRQVKKGLKHLKSILRS 255