Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., RNA polymerase sigma factor RpoD from Synechococcus elongatus PCC 7942

 Score = 82.4 bits (202), Expect = 1e-20
 Identities = 65/220 (29%), Positives = 110/220 (50%), Gaps = 18/220 (8%)

Query: 26  LVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM--- 82
           LV  IA   + R    +  +DLIQ G +GL+ A + +D  KG  F TYA   IR A+   
Sbjct: 174 LVVSIAKKYMNR---GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRA 230

Query: 83  LDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYH----SVL 138
           + D  R   +P  +++    I +   +L  E+ R PT+ E+A  + M++E+      S  
Sbjct: 231 IADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQ 290

Query: 139 MDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVL 198
           + I+    +G E+    D  +  F E +  +P   VA+   R+ L   + +L  RE  VL
Sbjct: 291 LPISLETPIGKEE----DSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVL 346

Query: 199 SLYYDEE----LNLKEIGEVLGVSESRVSQILSQSMQRLR 234
            L Y  +      L+EIG++  V+  R+ QI ++++++LR
Sbjct: 347 RLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386